barSeed - Barley Seed Development Database

Probe CUST_39723_PI390587928

Source Contig U35_31743

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39723_PI390587928	Hv_44K_v2	TTCACTCATCACTAGGCTGTCAGGGTGTTCATCGTTCGATCAGTTCGTCCTAATAAGCGG	12	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368888	1882	2e-24	128 - 187	100	60 / 60	plus	ABC06707 ABC12899
MLOC	MLOC_284.1	2420	2e-24	134 - 193	100	60 / 60	plus	ABC06707 ABC12899 ABC12900
MLOC	MLOC_284.2	2711	2e-24	108 - 167	100	60 / 60	plus	ABC06707 ABC12899 ABC12900
JLOC1	JLOC1_191.5	1855	8e-25	28 - 87	100	60 / 60	plus
JLOC1	JLOC1_191.4	2034	8e-25	68 - 127	100	60 / 60	plus
JLOC1	JLOC1_191.3	2646	8e-25	69 - 128	100	60 / 60	plus
JLOC1	JLOC1_191.2	2653	8e-25	69 - 128	100	60 / 60	plus
JLOC1	JLOC1_191.1	2898	8e-25	69 - 128	100	60 / 60	plus
Harvest35	U35_31743	556	3e-25	13 - 72	100	60 / 60	plus

Contig Sequence (556 bp)

>U35_31743 556 Hv_44K_v2
ACAACACGGCAGTTCACTCATCACTAGGCTGTCAGGGTGTTCATCGTTCGATCAGTTCGT
CCTAATAAGCGGATGAAAAAGAGAAGGAGCAGAGGACAAGGAAGAAGGATCGAGGATGGC
TTCAGCTGCGCTTCCCCAGGCCGTCCAGCCAAGGAAAAAAAGCAATTTTAAGTACGCCTT
CACCTGCGCCCTCTGCGCTTCCATGGCCACCATCGTCCTCGGCTACGACGTCGGGGTGAT
GAGCGGGGCGTCGCTGTACATCAAGAGGGACCTGCAGATCACGGACGTGCAGCTGGAGAT
CATGATGGGCATCCTGAGCGTGTACGCGCTCATAGGGTCCTTCCTCGGCGCGAGGACGTC
CGACTGGGTCGGCCGCCGCGTCACCGTCGTGTTCGCGGCCGCCATCTTCTTCACCGGCTC
CTTGCTCATGGGCTTCGCGGTCAACTACGCCATGCTCATGGTCGGCCGCTTCGTCACCGG
CATCGGCGTGGGCTACGCCATCATGGTGGCGCCCGTGTACACGGCCGAGGTGTCCCCGGC
GTCGGCCCGCGGGTTC

Homology of Contig U35_31743 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g39350.1	578	2e-70	protein\|transporter family protein, putative, expressed
Brachypodium v1_2	Bradi1g23440.1	515	3e-84
Arabidopsis v10	AT2G16120.1	511	2e-59	\| Symbols: PMT1, ATPMT1 \| polyol/monosaccharide transporter 1 \| chr2:6996727-6998441 REVERSE LENGTH=511