barSeed - Barley Seed Development Database

Probe CUST_39722_PI390587928

Source Contig U35_17450

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39722_PI390587928	Hv_44K_v2	ATGCTTCAAAATCATTCTTCGACTCGAAAAAGGGCAGGAGGATTGTATGGGGTTGGTCCA	1042	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252358.1	2112	2e-24	1081 - 1140	100	60 / 60	plus	ABC07811 ABC09965 ABC43005
MLOC	MLOC_35957.1	1203	2e-24	441 - 500	100	60 / 60	plus	ABC07811 ABC09965 ABC43005
MLOC	MLOC_59689.1	270	7e-23	195 - 254	98	59 / 60	minus	ABC07811 ABC09965
MLOC	MLOC_25463.1	245	7e-23	37 - 96	98	59 / 60	plus	ABC07811
JLOC1	JLOC1_23173.1	830	8e-25	441 - 500	100	60 / 60	plus
Harvest21	ABC07811	2073	3e-25	1043 - 1102	100	60 / 60	plus	ABC07811
Harvest35	U35_17450	2073	3e-25	1043 - 1102	100	60 / 60	plus

Contig Sequence (2073 bp)

>U35_17450 2073 Hv_44K_v2
CCTTATCACCTCCTACCTCACTCCCTCTCCCCTCTCCCCCCACCTCCCGCCGCCGCCATG
GCACAAGCCTGGGCCTTCCTCCTCCTCCCGGCGCTCGCCCTCGCCTCCTACGCCTCCCAC
CTCCTCCTCCCCGCCTATATAACCACCCCCCTCTGCGGCGGCGGCGATGGAGCCAGATCC
TTCTTCCTCTGCGCGCAGGCACCCAAGGACCAGGACCAGGACCCATCTCCTGCCAGCACC
ATGTACAAGACCGCCTTCCACTTCCAGCCCGCCAAGAACTGGATGAACGATCCATCTGGA
CCGATGTACTTCAATGGCATCTACCATGAATTCTACCAGTATAACCTCAACGGCCCCATT
TTTGGTGACATAGTTTGGGGCCATTCGGTTTCAACAGACCTCGTCAACTGGATTGGGCTT
GAACCCGCGTTAGTACGGGATACCCCAAGTGACATAGACGGTTGCTGGACCGGCTCAGTC
ACCATTCTGCCCGGTGGTAAACCGGTCATCATATACACTGGTGGCAACATAGATCAACAT
CAGACGCAAAACATCGCGTTTCCCAAAAACCGGTCTGACCCGTACCTGAGGGAATGGATC
AAAGCAGCCAATAACCCGGTGCTCCGACCGGATGAACCAGGGATGAACGTGATTGAGTTC
AGGGATCCGACAACCGGTTGGATCGGACCGGATGGACATTGGAGGATGGCAGTTGGTGGT
GAGCTGAACGGCTACAGTGCTGCACTTTTGTACAAGAGTGAAGACTTTCTGAATTGGACA
AAAGTTGATCACCCACTGTATTCACATAATGGATCCAATATGTGGGAGTGTCCGGATTTC
TTTGCGGCATTGCCGGGCAATAATGGTGGACTGGACCTGTCCGCAGAGATCCCGCAAGGC
GCCAAGCATGCCCTGAAAATGAGCGTGGATTCCGTTGACAAGTACATGATTGGGGTGTAT
GATCTTCAACGTGATGCCTTTGTGCCAGATAATGTCGTAGATGACCGTCGGCTGTGGTTG
AGGATAGATTACGGCACTTTCTATGCTTCAAAATCATTCTTCGACTCGAAAAAGGGCAGG
AGGATTGTATGGGGTTGGTCCAGGGAGACAGATAGTCCTTCAGATGATCTTGCAAAGGGT
TGGGCAGGACTCCATACAATCCCCAGGACAATTTGGTTAGCCGCCGATGGCAAGCAGTTG
TTACAATGGCCAGTTGAGGAGATTGAGTCCCTTCGAACAAATGAAATCAACCATCAAGGA
CTAGAGCTCAACAAGGGAGACCTATTTGAGATCAAGGAAGTTGACGCCTTTCAGGCTGAT
GTAGAGATAGATTTTGAGCTGGCGTCCATCGATGAAGCCGATCCTTTTGATCCTTCCTGG
CTTTTGGACCCCGAGAAGCATTGTGGGGAAGCGGGTGCATCGGTTCCTGGTGGTATAGGT
CCATTTGGACTTGTTATTCTGGCCTCCGACAACATGGACGAGCACACTGAGGTGTATTTC
AGAGTGTACAAGTCACAGGAAAAGTACATGGTACTCATGTGCTCTGACCTAAGAAGGTCT
TCCCTGAGACCAGGACTGGAGAAACCAGCCTATGGAGGCTTCTTTGAATTTGATCTTGCA
AAGGAAAGGAAGATATCACTCAGAACCCTGATTGACCGGTCGGCGGTGGAGAGCTTCGGC
GGCGGGGGTAGGGTTTGCATCACATCCAGAGTTTATCCGACGGTGCTCGCCAACGTCGGC
AGGGCACACATTTACGCTTTCAACAACGGAAATGCCATGGTCAGGGTGCCACAGCTCAGC
GCATGGACCATGAGGAAGGCACAAGTGAATGTGGAGAAGGGTTGGAGTGCTATTTAAAGC
AGAGGAGCAATTCGATTTTCTCGATTCTTTTACTATCATTCATGAGCATTGCCTGGCAGA
AATAAGGACATTCAGCAGGAAAAAATAGCCTGTCATTTCTTTGATGATCTCTAGTATTCA
TATATTGTAGTTACTACTTAGTAAGCCCTTCCCATCTCAATTACTTGTACCAATTTTTAT
AGAAACGCACACTAGTCATAAAATTCACGGGAA

Homology of Contig U35_17450 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g73580.1	513	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi2g61830.1	582
Arabidopsis v10	AT3G13790.1	584	\| Symbols: ATCWINV1, ATBFRUCT1 \| Glycosyl hydrolases family 32 protein \| chr3:4533084-4535831 REVERSE LENGTH=584