barSeed - Barley Seed Development Database

Probe CUST_39688_PI390587928

Source Contig U35_31755

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39688_PI390587928	Hv_44K_v2	CAAAAAAGCTCAGCTACATCTCTGTAGGGCGACAGCAATGGCGTCCAGAGCAACAGCGAC	24	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.350	1.198
Raw	3.051	2.995	3.303	3.758	3.699	3.222

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72076.2	1404	2e-24	17 - 76	100	60 / 60	plus	ABC01852 ABC01859 ABC01873
MLOC	MLOC_72076.1	1390	2e-24	171 - 230	100	60 / 60	plus	ABC01852 ABC01859 ABC01873
JLOC1	JLOC1_47944.1	1425	8e-25	82 - 141	100	60 / 60	plus
Harvest35	U35_31755	632	3e-25	25 - 84	100	60 / 60	plus
Harvest35	U35_13856	1359	3e-25	49 - 108	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_31755 632 Hv_44K_v2
GCAAGCCACACGACCATCATCGTGCAAAAAAGCTCAGCTACATCTCTGTAGGGCGACAGC
AATGGCGTCCAGAGCAACAGCGACCGTCCTCGTCCTGGCAGCCTTGATCTGCGCCGCCCA
GTCGACCATCTCGGCCGCGGACGCCGGCGGGCTGTCCCGGGGCTTCCACGCCGCGTCGTG
CCCGGGCCTGGAGAAGATCGTGGGGGACCTCGTGGCGGAGACCTTCCGGCGCGACGTCGG
CGTCGCCCCCGCCCTCATCCGCATCCTCTTCCACGACTGCTTCCCGCAGGGCTGCGACGC
GTCGGTGCTCCTCACCGGGAACAACAGCGAGCTGAATGCGGTGCCCAACCAGACGCTCCG
CCCCGTTGCTCTCGACCTCATCGAGCGCATCCGCGCCGCCGTCCATGCCGCCTGCGGCCC
GACCGTCTCCTGCGCCGACATCACCGTCCTCCTTCGGCAACCGGAGCCTCGACGTGGCCG
ACCTCGTCTCGCTCTCCGGCGCGCACACCTTCGGCGTCGCCCACTGCCCCGTCTTCTCCG
ACCGCTTCGCTCCCAACATCNGACCTCACCCGCTCATCGACCCGCTATTCGCCAGGAGGC
TGCGGGCCAAGTGCGCCAAGGACGTGCCCCAG

Homology of Contig U35_31755 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None