barSeed - Barley Seed Development Database

Probe CUST_39628_PI390587928

Source Contig U35_21446

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39628_PI390587928	Hv_44K_v2	TGATCATCTTCGGCGTGGCGGAGATCTTCTTCTCCCAGATCCCGGACTTCGACCAGATCT	672	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73207.2	1980	2e-24	693 - 752	100	60 / 60	plus	ABC02996 ABC02999 ABC14547 ABC39745
MLOC	MLOC_73207.1	1941	2e-24	654 - 713	100	60 / 60	plus	ABC02996 ABC02999 ABC14547 ABC39745
JLOC1	JLOC1_48730.2	2190	8e-25	839 - 898	100	60 / 60	plus
JLOC1	JLOC1_48730.1	2085	8e-25	734 - 793	100	60 / 60	plus
Harvest21	ABC15938	856	3e-25	673 - 732	100	60 / 60	plus
Harvest35	U35_21446	856	3e-25	673 - 732	100	60 / 60	plus

Contig Sequence (856 bp)

>U35_21446 856 Hv_44K_v2
GATCCGTCGCCCCTATACCACCTTGGGTCGATTTAGTGGAGCGGTAAACCGGCCGCCTTT
GAATTCCACCCCGCGTCCCGCTCCCTACCTCGTCCTCGTTGACGTTGTAATCGCGGTGCT
ACTTACCTAGGAGTGAGATGGGGCAGAACGGCGTGGGCAAGAACTACTATCAGGGGACGG
CGGCGGCGGCCATGGAGGTGTCCTCCGTGGAGCACGGCCAGGCGGCGGCCTCCAAGTGCT
ACGACGACGACGGCCGCCTCAAGCGCACCGGGACGATGTGGACGGCGAGCGCCCACATCA
TCACGGCGGTGATCGGGTCCGGGGTGCTGTCGCTGGCCTGGGCCATCGGGCAGCTCGGCT
GGGTGGCCGGCCCCGCCGTCATGCTGCTCTTCTCCCTCGTCACCTACTACACCTCCTCGC
TGCTCTCCGACTGCTACCGCTCCGGCGACGAAACCACCGGCAAGCGTAACTACACCTACA
TGGACGCCGTCAACGCCAACCTCAGTGGCATCAAGGTCCAGCTCTGCGGGTTCCTGCAGT
ACGCCAACATCGTCGGCGTCGCCATCGGATACACCATCGCCGCCTCCATTAGCATGCTTG
CGATCAAGAAGGCCAACTGCTTCCACGTCAAGGGGCACGTGAACCCGTGCCACATCTCGA
GCACGCCCTACATGATCATCTTCGGCGTGGCGGAGATCTTCTTCTCCCAGATCCCGGACT
TCGACCAGATCTCCTGGCTCTCCATCCTGGCTGCCATCATGTCCTTCACTTACTCCATCA
TCGGCCTCAGCCTCGGCATCGTCCAGGTGGTCGGCAACAAGGGCGTCAAGGGCAGCCTCA
CCGGCATCAGCATCGG

Homology of Contig U35_21446 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g34980.1	497	2e-125	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi2g24910.1	483	1e-133
Arabidopsis v10	AT5G09220.1	493	1e-99	\| Symbols: AAP2 \| amino acid permease 2 \| chr5:2866867-2868863 FORWARD LENGTH=493