barSeed - Barley Seed Development Database

Probe CUST_39627_PI390587928

Source Contig U35_21447

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39627_PI390587928	Hv_44K_v2	TACTGTGGTCTCGCCTCCTGTTAACTAGTTCTTGTTGGCAGCAATTAAGCTTAGAGAGAG	120	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364124	1922	2e-24	122 - 181	100	60 / 60	plus	ABC02996 ABC02999 ABC39745
MLOC	MLOC_68438.1	292	2e-24	118 - 177	100	60 / 60	plus	None
JLOC1	JLOC1_45282.2	1053	8e-25	766 - 825	100	60 / 60	plus
Harvest21	ABC15939	510	3e-25	96 - 155	100	60 / 60	plus
Harvest35	U35_21447	535	3e-25	121 - 180	100	60 / 60	plus

Contig Sequence (535 bp)

>U35_21447 535 Hv_44K_v2
AGACCAGGTACCCACCACCACCTCGCGCTCGCTCGGCAGCAGATATTTACTCAGTCTCTG
GTGCACTGCACAAGATCGCACCTCTAGCGTGCACCTCTAGCGTGCAGAGTGCACTACACT
TACTGTGGTCTCGCCTCCTGTTAACTAGTTCTTGTTGGCAGCAATTAAGCTTAGAGAGAG
GTCGATCGGGATGGCGGACAAGGTCGTGGCCACCTATTACTACCCGCCGATGGAGGTGGC
CGCCGCCGAGCTCGGCCAGACCGCCGGCTCCAAGCTCGACGACGACGGCCGCAACAAGCG
CACCGGCACGATGTGGACGGCGAGCTCGCACATCATCACGGCGGTGATCGGGTCCGGGGT
GCTGTCGCTGGGCTGGGCCATCGCGCAGCTCGGCTGGGTGGCCGGCCCCGCCGTCATGCT
GCTCTTCTCGCTCGTCACCTACTTCACTTCGTCTCTGCTCGCCGACTGCTACCGCTCCGG
CGACCAGAGCACCGGCAAGCGTAACTACACCTACATGGACGCCGTCAACGCCAAC

Homology of Contig U35_21447 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g34980.1	497	1e-56	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi2g56970.1	488	7e-60
Arabidopsis v10	None