barSeed - Barley Seed Development Database

Probe CUST_39535_PI390587928

Source Contig U35_8899

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39535_PI390587928	Hv_44K_v2	CGTGAGTCGTGAATGATCACCTGCTAGCTGTTTTTGACATACTATTATTTTTACTTCAAT	526	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10146.1	2404	2e-24	1681 - 1740	100	60 / 60	minus	ABC11172 ABC20034 ABC48971
MLOC	MLOC_10146.2	979	2e-24	195 - 254	100	60 / 60	minus	ABC20034
MLOC	MLOC_10145.1	2151	2e-24	1373 - 1432	100	60 / 60	minus	ABC11172 ABC20034 ABC48971
JLOC1	JLOC1_6616.1	723	8e-25	112 - 171	100	60 / 60	minus
Harvest21	ABC20034	640	3e-25	527 - 586	100	60 / 60	plus	ABC20034
Harvest35	U35_8899	640	3e-25	527 - 586	100	60 / 60	plus
Harvest35	U35_48271	385	1e-23	116 - 175	98	59 / 60	minus
Harvest35	U35_33795	545	1e-23	103 - 162	98	59 / 60	minus

Contig Sequence (640 bp)

>U35_8899 640 Hv_44K_v2
GCTCAAAAGGGGTGCAGCTTGCTTAATTGCCTCTTCTTCTGTAGTTCCATCCTCCCCAAG
CCCAAGGCAAGCATGGCGCACAACGCGCCGTCCAACTCTCTCATATTCCTCCTGGTCCTA
GTCATCATCCAAGCTGCCAGAGGCGCGACGTCGCGTCCATCGCCGGCGCCGGCGGGGTAC
GTGCCGGTGCGCGCCGTGGTGTACCGATCGGTGGCGCTCCCGGCCGCGACGGTAGCCGCC
GCCGGGGACGAGGCGCCGGGCGGCGGAGGAAGGTACGAGCCGTTCCAGCTGTGCATGGGG
TGCCGGTGCTGCGCGGCGGCGGCAGGGAGCAGCAGCAGTGCCAGCTCGAGCAGCTCATGC
GTGGACACGCGGTGTTGCTACGCCATCGACTGCAACGTCCCCGGCAAGCCCTTCGGCGTC
TGCGCCTTCTCCCCCCGCACATGCGGCTGCGGCGCCGGCAGCAACTGCACCACCACCTAG
GGCGATCCCCGTCGCTGCCGACCGCCGTTCAGCTAATGACCGGCCTCGTGAGTCGTGAAT
GATCACCTGCTAGCTGTTTTTGACATACTATTATTTTTACTTCAATTTGGATGGAAAAAG
GTTACATCTCACGATTTATTTTTACATTTCCCTTGTACCC

Homology of Contig U35_8899 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None