barSeed - Barley Seed Development Database

Probe CUST_39529_PI390587928

Source Contig U35_13905

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39529_PI390587928	Hv_44K_v2	CTAAATATGCAATCGTTCAGATCTTAATTCTCCTGTTCTATCTGCTGTTGCAATTGATCC	682	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76592.1	169	7e-23	55 - 114	98	59 / 60	plus	ABC00869 ABC34584
JLOC1	JLOC1_51074.1	153	4e-23	57 - 116	98	59 / 60	plus
Harvest21	ABC00869	783	1e-23	672 - 731	98	59 / 60	plus	ABC00869
Harvest35	U35_13905	742	3e-25	683 - 742	100	60 / 60	plus

Contig Sequence (742 bp)

>U35_13905 742 Hv_44K_v2
CAGACAGCGGAGCGCATTCCGATCCCCTCACCGCCGCCCACGCATCTCGAGCGGTTTCCA
GTTCGCCGGAGAAGTAGCAAGCAAGAAGATGGCCGGGAGGAAGGGCGGCGACAGGAAGAA
GGCGGTAACCAGGTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCGTTA
CCTCAAGAAGGGCCGTTACGCCCAGCGCGTCGGCTCCGGCGCCCCCGTCTACCTCGCCGC
CGTCCTCGAGTACCTCGCTGCCGAGCTGCTGGAGCTTGCCGGCAACGCGGCCAAGGACAA
CAAGAAGAGCCGCATCATCCCGCGCCACCTGCTGCTCGCCGTCCGCAACGACCAGGAGCT
CGGAAGGCTGCTCGCCGGCGTCACCATCGCCCACGGCGGTGTCATCCCCAACATCAACTC
TGTTCTTCTCCCGAAGAAGTCCACCGCCGCCGCCGAGAAGGAGACCAAGTCGCCCAAGAA
GAAGACGGCCACCAAGTCCCCGAAGAAGAAGACCGCCGCCACCAAGGAGTAGCCGCCCGC
ACCCATAGCCTAGCCTGTGTTGCTTCGTTCCATTTCTCATGGACAAGATGAGCAGTCTTT
TGGTTAGTTAGATGAGCAGTGCTTCTGTTCTTAGATTGGCGCAGCAAGGGTGACATTGTA
TCTGTGATTTCTGTAGGGCTGGCTAAATATGCAATCGTTCAGATCTTAATTCTCCTGTTC
TATCTGCTGTTGCAATTGATCC

Homology of Contig U35_13905 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17100.1	160	6e-51	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None