barSeed - Barley Seed Development Database

Probe CUST_39521_PI390587928

Source Contig U35_13913

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39521_PI390587928	Hv_44K_v2	TGCGGTTGCAATTGATCATCTGAATATATTGCTACCTGCGCTGTTTTTGTACTGAAAAAA	727	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.133	1.247	1.056	1.093	0.575	0.477
Raw	7870.563	13988.900	10123.940	16187.920	3063.870	2747.570

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_16040.1	685	1e-22	557 - 612	100	56 / 56	plus
Harvest21	ABC34584	524	5e-23	48 - 103	100	56 / 56	minus	ABC34584
Harvest35	U35_13913	798	3e-25	728 - 787	100	60 / 60	plus

Contig Sequence (798 bp)

>U35_13913 798 Hv_44K_v2
CTCAGAGCAGAGCGCATTCCGACCCCGCACCGCCGCCCACGCATCCCGACCGGTTTCTTC
TTCGCCGGAGTAGCAGCAAGCAAGCAAGATGGCCGGAAGGAAGGGCGGCGACAGGAAGAA
GGCGGTGACCAGGTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCGTTA
CCTCAAGAAGGGCCGCTACGCCCAGCGCGTCGGCTCCGGCGCCCCCGTCTACCTTGCCGC
CGTCCTCGAGTACCTCGCCGCCGAGCTGCTGGAGCTCGCCGGCAACGCGGCCAAGGACAA
CAAGAAGACCCGCATCATCCCGCGCCACCTGCTGCTCGCCGTCCGCAACGACCAGGAGCT
CGGCAGGCTTCTCGCCGGCGTCACCATCGCCCACGGCGGTGTCATCCCCAACATCAACTC
CGTCCTGCTCCCCAAGAAGTCCCCCGCCGCCGCCGAGAAGGAGGCCAAGTCGCCCAAGAA
GAAGACGACCACCAAGTCCCCCAAGAAGAAGGCCCCCGCCGCCAAGGAGTAGCCGCCCGC
ACCCATAGCCTAGCCTGTGTTGCTTCGTTCCATTTCTCATGGACAAGATGAGCAGTCTTT
TGGTTAGTTAGATGAGCAGTGCTTCTGTTCTTAGATTGGCGCAGCAAGGGTTACATTGTG
TCTGTGATATCTGTAGGGATGGCTAAATATGCAATCGTTCAGATCTGAAAAAAAAAAAAA
AAAAATCTGCGGTTGCAATTGATCATCTGAATATATTGCTACCTGCGCTGTTTTTGTACT
GAAAAAAAAAAAAAAAAA

Homology of Contig U35_13913 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None