barSeed - Barley Seed Development Database

Probe CUST_39520_PI390587928

Source Contig U35_13914

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39520_PI390587928	Hv_44K_v2	GCTGTGTCTTTGTGTATTTTCTGACCGTGGTTTCAATGAAAATTTGCTTTCATGCAAAAA	602	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.253	1.379	1.106	0.974	0.526	0.422
Raw	25005.267	43440.133	30451.467	41844.533	7855.977	6874.583

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44860.1	1171	7e-23	174 - 230	100	57 / 57	plus	ABC00028 ABC00118 ABC00414
JLOC1	JLOC1_29109.1	325	4e-23	174 - 230	100	57 / 57	plus
Harvest21	ABC00118	674	3e-25	603 - 662	100	60 / 60	plus	ABC00118
Harvest35	U35_13914	676	3e-25	603 - 662	100	60 / 60	plus

Contig Sequence (676 bp)

>U35_13914 676 Hv_44K_v2
GCGGCAATCAGCAGTCAAGCAATCTCCACACACATCTCTCCTACTCCCGAATCCGTTCTC
CACCTAGCCATGGACGCCTCAGCCACCGTAGCCGCCGGGAAGGGGAAGAAGGGCGCGGCC
GGGCGCAAGGCCGGCGGTCCCAGGAAGAAGTCCGTGTCGCGGTCCGTCAAGTCCGGGCTC
CAGTTCCCCGTCAGCCGCATCGGGCGCTTCCTCAAGAAGGGCCGCTACGCGCAGCGCGTC
GGCTCCGGCGCCCCCGTCTACCTCGCGGCGGTCCTCGAGTACCTCGCCGCCGAGCTGCTG
GAGCTGGCGGGCAACGCCGCCAAGGACAACAAGAAGAGCCGCATCACCCCCCGCCACCTG
CTGCTCGCCATCAGGAACGACGAGGAGCTCGGCAAGCTGCTCGCCGGCATCACCATCGCG
CACGGCGGCGTCATCCCCAACATCAACCCGGTGCTCCTCCCCAAGAAAACCGCCGAGAAG
TCGCCCAAGGAGCTCAAGTCGCCCAAGAAGACCGCCAAGTCCCCCAAGAAGGCGTAGTCG
GCCGTTGCCTAGTTAGTCTGTAACTAGGATGGCTGGATGGATGGGTGTGCTTCACTGTTC
TTGCTGTGTCTTTGTGTATTTTCTGACCGTGGTTTCAATGAAAATTTGCTTTCATGCAAA
AAAAAAAAAAAAAAAA

Homology of Contig U35_13914 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None