barSeed - Barley Seed Development Database

Probe CUST_39517_PI390587928

Source Contig U35_13917

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39517_PI390587928	Hv_44K_v2	ATTTTGAGCCCTAAGATGTTTCTGAAGTAAACAGCTAAAGAGAGTCCTGTTCAATTTCGT	875	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72618.2	1123	2e-24	60 - 119	100	60 / 60	minus	ABC00093 ABC00181 ABC00200 ABC00395 ABC00652 ABC00969 ABC45765
MLOC	AK252168.1	1324	7e-23	1268 - 1324	100	57 / 57	plus	ABC00093 ABC00181 ABC00200 ABC00395 ABC00652 ABC00969 ABC25131 ABC45765
JLOC1	JLOC1_48305.1	1125	8e-25	982 - 1041	100	60 / 60	plus
Harvest21	ABC47255	569	3e-25	65 - 124	100	60 / 60	minus
Harvest21	ABC00144	972	3e-25	866 - 925	100	60 / 60	plus
Harvest35	U35_46751	569	3e-25	65 - 124	100	60 / 60	minus
Harvest35	U35_13934	703	3e-25	635 - 694	100	60 / 60	plus
Harvest35	U35_13917	975	3e-25	876 - 935	100	60 / 60	plus

Contig Sequence (975 bp)

>U35_13917 975 Hv_44K_v2
CTCTCTCCCCGCTTCTCTCTCGCGACCCCCTGTTTCCGCCCCCCTTCTCCGGCTCCGGCG
CCGGCGAACCCACCGCGGATCGAGCGGTTCCTCCGATCAGGAGAGACAAACCGAGAGGAA
GAGCACCTACGCGGGAGGAGAGGAGATGGGGCTCACGTTTACCAAGCTGTTCAGCCGCCT
GTTCGCCAAGAAGGAGATGCGGATCCTGATGGTGGGTCTCGACGCAGCCGGAAAGACCAC
CATCCTCTACAAGCTCAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGGGTTCAA
TGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGGATGTCGGGGGTCAGGA
CAAGATCAGGCCACTGTGGAGGCATTACTTCCAGAACACGCAGGGTCTCATCTTTGTTGT
TGACAGCAACGATAGGGACCGTGTTGTTGAAGCAAGGGATGAGCTCCACAGGATGCTGAA
TGAGGATGAGTTACGTGATGCTGTGCTGCTTGTGTTTGCTAACAAGCAAGATCTTCCAAA
TGCCATGAATGCTGCTGAGATCACTGATAAGCTTGGCCTGCACTCCCTTCGCCAGCGACA
CTGGTACATCCAGAGCACTTGTGCTACAACAGGGGAGGGACTGTATGAAGGCCTGGACTG
GCTGTCCAGCAACATTGCCAACAAGTCCTAAATTTTCGTCAAGATTTTGAAAGAGCTAGG
AGCGCTTTGGATGGATGATTCAATCACCGGGTACCTAGGGATTGTGTTGGGATGGGATGG
TGCTATGCTATTCCCGTATGTACTGTGTATTTTCCTGAGATCAACAGTTACCGAGCTCCG
GCTGTGGTTTCACTGTCATACTATTGTTTTATTGTATTTTGAGCCCTAAGATGTTTCTGA
AGTAAACAGCTAAAGAGAGTCCTGTTCAATTTCGTAATAAAAAAAAAAAAAAAAAAAAAA
TCTATGCATGTATAT

Homology of Contig U35_13917 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g16030.4	182	2e-126	protein\|ADP-ribosylation factor, putative, expressed
Brachypodium v1_2	Bradi1g04220.2	182	7e-127
Arabidopsis v10	AT5G14670.1	188	4e-124	\| Symbols: ATARFA1B, ARFA1B \| ADP-ribosylation factor A1B \| chr5:4729319-4730495 FORWARD LENGTH=188