barSeed - Barley Seed Development Database

Probe CUST_39514_PI390587928

Source Contig U35_13920

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39514_PI390587928	Hv_44K_v2	GATTTCTGTAGGGCTGGCTAAATATGCAATCGTTCAGATCTGAATTCTCCTGTTAAAAAA	654	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76592.1	169	3e-21	38 - 91	100	54 / 54	plus	ABC00869 ABC34584
JLOC1	JLOC1_51074.1	153	2e-21	40 - 93	100	54 / 54	plus
Harvest21	ABC00011	765	2e-22	666 - 727	97	60 / 62	plus
Harvest21	ABC00869	783	6e-22	655 - 708	100	54 / 54	plus	ABC00869
Harvest35	U35_13920	783	3e-25	655 - 714	100	60 / 60	plus

Contig Sequence (783 bp)

>U35_13920 783 Hv_44K_v2
GCTCAGACAGCAGTGCGCATTCCGATCCCCGCATCTCGAGCAGCTTCCAGTTCGCCGGAG
AAGTAGCAAGCAAGAAGATGGCCGGGAGGAAGGGCGGCGACAGGAAGAAGGCGGTGACCA
GGTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCGTTACCTCAAGAAGG
GCCGTTACGCCCAGCGCGTCGGCTCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGT
ACCTCGCCGCCGAGCTGCTGGAGCTTGCCGGCAACGCGGCCAAGGACAACAAGAAGAGCC
GCATCATCCCGCGCCACCTGCTGCTCGCCGTCCGCAACGACCAGGAGCTCGGAAGGCTGC
TCGCCGGCGTCACCATCGCCCACGGCGGTGTCATCCCCAACATCAACTCTGTTCTTCTCC
CGAAGAAGTCCACCGCCGCCGCCGAGAAGGAGGCCAAGTCGCCCAAGAAGAAGACGGCCA
CCAAGTCCCCGAAGAAGAAGACCGCCGCCACCAAGGAGTAGCCGCCCGCACCCATAGCCT
AGCCTGTGTTGCTTCATTCCATTTCTCATGGACAAGATGAGCAGTCTTTTGGTTAGTTAG
ATGAGCAGTGCTTCTGTTCTTAGATTGGCGCAGCAAGGGTGACATTGTATCTGTGATTTC
TGTAGGGCTGGCTAAATATGCAATCGTTCAGATCTGAATTCTCCTGTTAAAAAAAAAAAA
AAAATTGATCCTGTGAATATATGCTACCTGTGCTGTTTTTGGTATTAAAAAAAAAAAAAA
AAA

Homology of Contig U35_13920 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None