barSeed - Barley Seed Development Database

Probe CUST_39513_PI390587928

Source Contig U35_13921

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39513_PI390587928	Hv_44K_v2	CAATGGTGACATTGTACCTGGGATTTATTATATGAGAATGGTGAAAGATGCAATCGTTTC	633	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37489.1	503	2e-24	132 - 191	100	60 / 60	minus	ABC00085 ABC00137 ABC00145 ABC00158 ABC00167 ABC00286 ABC00440 ABC00443 ABC00494 ABC00571 ABC00671 ABC00869 ABC34584
JLOC1	JLOC1_24276.1	503	8e-25	132 - 191	100	60 / 60	minus
Harvest21	ABC00158	725	3e-25	634 - 693	100	60 / 60	plus	ABC00158
Harvest21	ABC00874	698	2e-21	634 - 686	100	53 / 53	plus
Harvest35	U35_13928	637	3e-25	548 - 607	100	60 / 60	plus
Harvest35	U35_13921	718	3e-25	634 - 693	100	60 / 60	plus

Contig Sequence (718 bp)

>U35_13921 718 Hv_44K_v2
GATTCGATCCAGCTCAACCTTCGCCTACTCCGCACCTCGTGAGCCCTCGTCGCCGGAGCA
GCAGCAAGCAAGAAGATGGCCGGAAGGAAGGGCGGCGACAGGAAGAAGGCGGTGACCCGG
TCCGTGAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCGCTACCTCAAGAAGGGC
CGCTACGCCCAGCGCGTCGGCTCCGGCGCCCCGGTCTACCTTGCCGCCGTCCTCGAGTAC
CTCGCCGCAGAGGTGCTTGAGCTCGCCGGCAATGCCGCCAAGGACAACAAGAAGACCCGC
ATCATCCCGCGCCACCTGCTTCTCGCCGTCCGCAACGACCAGGAGCTCGGCAGGCTGCTC
GCCGGCGTCACCATCGCCCACGGCGGCGTGATCCCCAACATCAACTCCGTTCTGCTCCCC
AAGAAGTCAGCCGCCGCGGCCGAGAAGGAGGCCACCAAGTCGCCCAAGAAGAAGGCCGCC
ACCAAGTCCCCCAAGAAGAAGGCCCCCGCCACCAAGGAGTAGCCGCCTGTACCCATAGCC
CCGCCATTGTTGCTTAGATCCATTTCTCATGGACTAAGATGATATCCTGTATGTAATGCC
TGGTAGTCCGTAGTGCCTGTTCGATTCGTCTAGCAATGGTGACATTGTACCTGGGATTTA
TTATATGAGAATGGTGAAAGATGCAATCGTTTCAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13921 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None