barSeed - Barley Seed Development Database

Probe CUST_39506_PI390587928

Source Contig U35_13928

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39506_PI390587928	Hv_44K_v2	TGACATTGTACCTGGGATTTATTATATGAGAATGGTGAAAGATGCAATCGTTTCAATCTG	553	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37489.1	503	2e-24	126 - 185	100	60 / 60	minus	ABC00085 ABC00137 ABC00145 ABC00158 ABC00167 ABC00286 ABC00440 ABC00443 ABC00494 ABC00571 ABC00671 ABC00869 ABC34584
JLOC1	JLOC1_24276.1	503	8e-25	126 - 185	100	60 / 60	minus
Harvest21	ABC00158	725	5e-23	640 - 695	100	56 / 56	plus	ABC00158
Harvest35	U35_13928	637	3e-25	554 - 613	100	60 / 60	plus
Harvest35	U35_13921	718	5e-23	640 - 695	100	56 / 56	plus

Contig Sequence (637 bp)

>U35_13928 637 Hv_44K_v2
CCTTCGCCTACTCCGCACCTCGTGAGCCCTCGTCGCCGGAGCAGCAGCAAGCAAGAAGAT
GGCCGGAAGGAAGGGCGGCGACAGGAAGAAGGCGGTGACCCGGTCCGTGAAGGCCGGGCT
CCAGTTCCCCGTCGGCCGCATCGGGCGCTACCTCAAGAAGGGCCGCTACGCCCAGCGCGT
CGGCTCCGGCGCCCCGGTCTACCTTGCCGCCGTCCTCGAGTACCTCGCCGCAGAGGTGCT
TGAGCTCGCCGGCAATGCCGCCAAGGACAACAAGAAGACCCGCATCATCCCGCGCCACCT
GCTTCTCGCCGTCCGCAACGACCAGGAGCTCGGCAGGCTGCTCGCCGGCGTCACCATCGC
CCACGGCGGCGTGATCCCCAACATCAACTCCGTTCTGCTCCCCAAGAAGTCAGCCGCCGC
GGCCGAGAAGGAGGCCACCAAGTCGCCCATAGCCCCGCCATTGTTGCTTAGATCCATTTC
TCATGGACTAAGATGATATCCTGTATGTAATGCCTGGTAGTCCGTAGTGCCTGTTCGATT
CGTCTAGCAATGGTGACATTGTACCTGGGATTTATTATATGAGAATGGTGAAAGATGCAA
TCGTTTCAATCTGAAAAAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_13928 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17100.1	160	1e-51	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g37327.1	160	4e-52
Arabidopsis v10	None