barSeed - Barley Seed Development Database

Probe CUST_39505_PI390587928

Source Contig U35_13929

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39505_PI390587928	Hv_44K_v2	CTGCTTGATCTTATCCGGTTTCCATGGTTGAAGAAATTGAAAGGATCTGAACTTTAAGCA	718	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.323	1.125	1.124	0.980	0.538	0.454
Raw	81569.733	107096.666	93853.667	124540.600	24846.700	22777.433

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64939.1	1309	2e-24	80 - 139	100	60 / 60	minus	ABC00321 ABC31695 ABC48284
JLOC1	JLOC1_42681.1	988	8e-25	786 - 845	100	60 / 60	plus
Harvest21	ABC00321	797	3e-25	720 - 779	100	60 / 60	plus	ABC00321
Harvest21	ABC48284	157	2e-21	22 - 77	98	55 / 56	minus	ABC48284
Harvest35	U35_13929	796	3e-25	719 - 778	100	60 / 60	plus

Contig Sequence (796 bp)

>U35_13929 796 Hv_44K_v2
AGGCTTTCGCCTCCACAGCCTCTTGTCCCCTCGCCCGTTCCGTCTCCCGTAGCAGCGCCT
CCCTTCGTTCCCCTCTTCCTCGGTTGCTGAAATGGCCGGCCGTGGGAAGGCAATCGGCGC
TGGCGCTGTCAAGAAGGCGACGTCGAGGAGTTCCAAGGCCGGGCTGCAGTTCCCAGTTGG
CAGGATCGCCAGGTTCCTCAAGGCCGGCAAGTACGCAGAGCGCGTCGGAGCCGGCGCCCC
TGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCTGAGGTTCTGGAGCTGGCCGGCAA
TGCCGCCAGGGACAACAAGAAGACCCGTATCGTGCCCCGCCACATCCAGCTCGCTGTGCG
CAATGACGAGGAGTTGACCAAGTTGCTTGGCGGTGCCACCATTGCCAGTGGCGGTGTGAT
GCCCAACATCCACCAGCACCTCCTCCCAAAGAAGGCCTCTTCTTCCAAGGCCTCCACCGT
CGATGACGACGACAACTGAGGCCCGCCCTTTTCATCACTGCCACCCCAGTCATGGATTAC
ATTTGCATCACAAAGAGGGAGGAGTTTCTTGTTTCCTAGGATTTAGTGTCTTGGTTTTCA
GAAGAGTCCGGATGGTTTGGTATTAGGAATTTCTAGTTGGTGGTCGGATTAGTTGCTTCA
ATCCTATGGCTGTGAATATGCCAAAGAAATTATCGAGTGTTTAAACTCAGATGTAATCCT
GCTTGATCTTATCCGGTTTCCATGGTTGAAGAAATTGAAAGGATCTGAACTTTAAGCAAA
AAAAAAAAAAAAAAAA

Homology of Contig U35_13929 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g36130.1	136	5e-54	protein\|core histone H2A/H2B/H3/H4, putative, expressed
Brachypodium v1_2	Bradi1g25400.1	136	7e-53
Arabidopsis v10	None