barSeed - Barley Seed Development Database

Probe CUST_39492_PI390587928

Source Contig U35_13933

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39492_PI390587928	Hv_44K_v2	GGTTTCTTATATGCGAAATGATGTTTGGTTGTTTGGATGATTGAATTCCCTGTGAAGTTT	648	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72638.1	492	3e-21	1 - 54	100	54 / 54	minus	ABC00350 ABC44597
JLOC1	JLOC1_48320.1	1088	4e-23	793 - 852	98	59 / 60	plus
Harvest35	U35_13933	730	3e-25	649 - 708	100	60 / 60	plus

Contig Sequence (730 bp)

>U35_13933 730 Hv_44K_v2
GTTTAGAAGCTTCCAGAGGGCGATGAGTTCCCCGGGAGCAGGCGCCGGCGGCCGCGGCAA
GGCCAAGGCGACCAAGTCGGTGTCGCGGTCGTCCAAGGCCGGCCTCCAGTTCCCCGTCGG
CCGCATCGCGCGCTACCTCAAGGCCGGCAAGTACGCCGAGCGCGTCGGCGCCGGCGCCCC
CGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGGTGCTGGAGCTGGCGGGGAA
CGCGGCGCGGGACAACAAGAAGACCCGGATCGTGCCGCGGCACATCCAGCTGGCGGTGCG
CAACGACGAGGAGCTGAGCAAGCTGCTGGGCTCGGTGACGATCGCCAACGGCGGCGTGAT
GCCCAACATCAACCAGGTGCTGCTGCCCAAGAAGGCCGGGGCCAAGGGGGAGATCGGGTC
CATCTCCCAGGAGTTCTGAGCGCGCGCTGCTACAAGGCTAAAGGAGGGGCTGCCCTGTCA
CTCATGTCTGGCTGACGACGATGTTCATCTGAAGTTTTTGGTTGGGTTGGGGTGTGTTTT
GGGAGTCTGAATCTCGTCATGGAAAAAACCTTGGGTGTCTTCTGAGCTCTGCTCGCGGTT
GAATGAATGAGTCGGTCGATCAGTAGAAGAGAGGAAACATATACATGTGGTTTCTTATAT
GCGAAATGATGTTTGGTTGTTTGGATGATTGAATTCCCTGTGAAGTTTTAGTTAAAAAAA
AAAAAAAAAA

Homology of Contig U35_13933 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g51200.1	138	2e-55	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g10390.1	137	5e-57
Arabidopsis v10	AT1G54690.1	142	3e-55	\| Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX \| gamma histone variant H2AX \| chr1:20414607-20415206 REVERSE LENGTH=142