barSeed - Barley Seed Development Database

Probe CUST_39487_PI390587928

Source Contig U35_13938

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39487_PI390587928	Hv_44K_v2	ATTGTGTGTATGAACCCCTGTCTTTTTGAATTTTAGTAAGATTGAGGTGCGGTTGCCAAA	916	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251040.1	988	2e-24	913 - 972	100	60 / 60	plus	ABC00093 ABC00181 ABC00200 ABC00395 ABC00969
MLOC	MLOC_33833.1	1336	6e-24	1223 - 1281	100	59 / 59	plus	ABC00093 ABC00181 ABC00200 ABC00395 ABC00969
JLOC1	JLOC1_21861.1	1467	3e-24	1075 - 1133	100	59 / 59	plus
Harvest21	ABC00395	988	3e-25	914 - 973	100	60 / 60	plus	ABC00395
Harvest21	ABC00872	974	1e-23	897 - 953	100	57 / 57	plus
Harvest21	ABC28870	425	5e-23	302 - 361	98	59 / 60	plus
Harvest35	U35_13938	1058	3e-25	917 - 976	100	60 / 60	plus

Contig Sequence (1058 bp)

>U35_13938 1058 Hv_44K_v2
CTGCACGACAGCCATCTTCATCTTCCGTGCGGTTCCCAGGCTCCAACTCCCACGCCCGTC
TCCCCCGAGATCAGGCGGAGCACGCCCGGGAGCGCCGAGACCCCGAGAGCCTCCGTCTCC
ACCACCCCGGAGCAGAGATGGGGCTCACGTTCACCAAGCTGTTCAGCCGCCTCTTCGCCA
AGAAGGAGATGAGGATTCTCATGGTTGGTCTCGATGCCGCTGGTAAGACCACCATCCTCT
ACAAGCTCAAGCTCGGAGAGATCGTCACCACCATCCCAACCATCGGTTTTAATGTCGAAA
CTGTTGAATACAAGAACATCAGCTTCACTGTTTGGGATGTGGGGGGCCAAGACAAGATCA
GGCCCCTGTGGAGGCACTACTTCCAGAATACGCAGGGCCTCATTTTTGTCGTCGACAGCA
ATGATAGGGAACGTGTTGTTGAGGCTAGAGACGAGCTCCACAGGATGCTGAATGAGGATG
AGCTGCGTGACGCTGTGTTGCTTGTATTTGCGAACAAACAAGATCTTCCTAATGCGATGA
ATGCGGCTGAAATCACTGACAAGCTTGGCCTGCACTCTCTGCGCCAGCGGCACTGGTACA
TTCAGAGCACTTGCGCGACATCTGGTGAAGGGTTGTACGAGGGACTTGACTGGCTCTCCA
ACAACATTGCCAACAAGGCTTGAAGCATATCGAGGACTGCTTCGAGGAATGAACGATGCT
GGATGTCTCGACAACTCACTACTACCATTTTACATATTGTGATATATATACACTGTACAA
CAGATAGTATGTGTGCGTATGTGACAGGCAGAAGCTCCCTTCTTTAAGTGAGCTAGTATC
AGGTCAGGTTTTTTTTTTTTGTATGGATATTATCAGTATTTCTGTGCCGTGGTTTTACAA
GGTTTACTTTGTCAACATTGTGTGTATGAACCCCTGTCTTTTTGAATTTTAGTAAGATTG
AGGTGCGGTTGCCAAAAAAAAAAAAAAAAAAGTTGGTTCAATTGAGTGATGTGGATGGTA
ACATTATTTTTAAAAAAAAAATATTATTATAAAAAAAG

Homology of Contig U35_13938 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g41060.1	182	7e-127	protein\|ADP-ribosylation factor, putative, expressed
Brachypodium v1_2	Bradi2g53077.1	362	1e-124
Arabidopsis v10	AT3G62290.1	181	1e-124	\| Symbols: ATARFA1E, ARFA1E \| ADP-ribosylation factor A1E \| chr3:23052287-23053545 FORWARD LENGTH=181