barSeed - Barley Seed Development Database

Probe CUST_39446_PI390587928

Source Contig U35_48497

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39446_PI390587928	Hv_44K_v2	AAACTAAACAGAACATGCTATCATTGTATTTCTGTTGTTAACCCAATCGTGATCGATGGC	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68912.1	2192	3e-21	2016 - 2075	97	59 / 61	plus	ABC12286
JLOC1	JLOC1_45640.1	1969	2e-21	1883 - 1942	97	59 / 61	plus
Harvest21	ABC50325	494	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_48497	494	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (494 bp)

>U35_48497 494 Hv_44K_v2
GCCATCGATCACGATTGGGTTAACAACAGAAATACAATGATAGCATGTTCTGTTTAGTTT
ATTCATGAAAGCAAACTGATCCCGACCGGTAGTAGGAACATCAGGATCCAAGTGTTAATT
TGTCGGACATCTCTCGCACATGAATGCAGCAGCTCTGCTACATCACTTGCGTCGTCGTCT
CTATCAGCGGCGGGATGCTCTGCTCGTTTCTGAAGTAGTTCGTCGGATCCACCACGGATT
TCACCGATGCAAGCCTCCGGTAGTTACCCACGAAGTAGCGCTCGCCCCAGAGCGGGCCGT
TCTCGAAGTCGAAGGTGCCGTCGTCGTCGTTCTGGCCGATGTCCAGGTCTCGGAAGTTCA
CGTACGCCCGCCTCGGGTTCTTGCTCACGTGCTGCCCCATGAAGTCGTATAAGCCGCCGA
TCCAGCTCTTCGCCGNCGCGCCGCCCTCACCCTGCTGTTGCCAGAATGCCATGTACTGGA
TGACGTACAGCACG

Homology of Contig U35_48497 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None