barSeed - Barley Seed Development Database

Probe CUST_39445_PI390587928

Source Contig U35_48498

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39445_PI390587928	Hv_44K_v2	TGGCGATGTACTGTGGAATGTAAGAAGTGAAGGAAGTTTGTTCCCATTTCTGGGCAGACT	16	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5618.2	2805	2e-24	28 - 87	100	60 / 60	minus	ABC01204 ABC01205 ABC01206 ABC01207 ABC01213
MLOC	MLOC_5618.1	2323	2e-24	99 - 158	100	60 / 60	minus	ABC01204 ABC01205 ABC01206 ABC01207 ABC01213
JLOC1	JLOC1_3630.1	2847	8e-25	2668 - 2727	100	60 / 60	plus
Harvest21	ABC01213	787	3e-25	1 - 60	100	60 / 60	minus	ABC01213
Harvest35	U35_48498	523	3e-25	17 - 76	100	60 / 60	minus

Contig Sequence (523 bp)

>U35_48498 523 Hv_44K_v2
TTCCTCTTCTTCTTAGAGTCTGCCCAGAAATGGGAACAAACTTCCTTCACTTCTTACATT
CCACAGTACATCGCCAAACGACACCAAATGAGTGAAACACTTAGATTTGACCCCGAGAAT
CAAACACGGCGAGACTGGCACTCTAATAACAACTTCTAACTGGACACGGAGCGACCAAAC
GACCACCAGAACTCAACTCTAACCATGGATAGACACACGACAGACAGACAGACTCTGTTT
GTTTCATCTTCTTCAGGTTCATGTTCAGGTTCAGTCGACCTCCTCCATCTTGCTCTCCTC
GGCGCCCTCCTCCTCCAACGAGGGCATGTCGGCGTCCTCTTCCTCGGCATCGGCCTGATC
ATCGATGTTGAGCCCGAGCTTGAGCATGCGGTGGATCCTGGCGGCGAAGGTGTTGGGGTC
GTCGAGGCTGAAGCCGGAGGTTAGCAGGGCCGTCTCGAAGAGCAGCATGATGAGGTCCTT
GACGGATTTGTCGTTCTTGTCGGCGTCGGCGCGCTTGCGGAGC

Homology of Contig U35_48498 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None