barSeed - Barley Seed Development Database

Probe CUST_39419_PI390587928

Source Contig U35_7427

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39419_PI390587928	Hv_44K_v2	GAAACTAATCCTAGGGTGGAGTTTGTTTTCCTTCCTTCTCTCTTTTTTCCATAGCCTTCT	556	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361411	1806	2e-24	1549 - 1608	100	60 / 60	plus	ABC02157 ABC13200 ABC16177
MLOC	MLOC_75188.1	1223	2e-24	895 - 954	100	60 / 60	plus	ABC02157 ABC13200 ABC16177
JLOC1	JLOC1_50147.1	1176	8e-25	901 - 960	100	60 / 60	plus
Harvest21	ABC16177	655	3e-25	557 - 616	100	60 / 60	plus	ABC16177
Harvest35	U35_7427	655	3e-25	557 - 616	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_7427 655 Hv_44K_v2
GCCCAAGACGCTGTGCAACGCGTGCGGGGTGCGGTACAAGTCCGGGCGGCTGGTGCCGGA
GTACCGGCCGGCGGCGAGCCCGACGTTCGTGCCGTCCAAGCACTCCAACTCGCACCGCAA
GGTGGTGGAGCTGCGGCGCCAGAAGGACGCTCCGCCGACGCAGCATCAGCTCCTGCACCA
GCAGCCGCAGCAGCACCAGCTTGGGCAGGGCCTGGGGTTCCACGTGCCGAGCCCGCTGCT
GTTCGACGGGCCGGCGGCGCCGCACCTGGGCGGCGGCGCGGAAGAGTTCCTCATCCGCAA
CCGCATAGGCCCCGACCACCGGCAGCTCATCTAGCTTAGCTAGCTAGCTAGCGCGGCCCG
CCTAGGAGGAGGAGGATCGTTTCCTTAGACCAGCAGCAATAATTCAGCAAGAAGAAGAGC
CAGCGGCAGTGCCCAGCCGAAACTTTTTTCTAGGAGTTGTTGTTTCTCCGGATTTTAATT
TACCTTTTTTTTCCTGAGACCTGTATGCTTGCTTGCTTGCTACACTCTCCGTGCTTCTCA
GCTCTCGAGTTCCTTAGAAACTAATCCTAGGGTGGAGTTTGTTTTCCTTCCTTCTCTCTT
TTTTCCATAGCCTTCTTTTCTTTTTGCCCTTGCATAGATTTTTTTTTTCATCTTC

Homology of Contig U35_7427 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None