barSeed - Barley Seed Development Database

Probe CUST_393_PI415269222

Source Contig TA32442_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_393_PI415269222	Hv_44K_v2	ACAGTGAGTGTTACAGTTACAGAGAAAGTTAAGGTGACTTCTTGTGGGTTTCTCTGCTTG	1316	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14727.2	1516	2e-24	58 - 117	100	60 / 60	minus	ABC02957 ABC02958 ABC33947
MLOC	MLOC_14727.1	1444	2e-24	83 - 142	100	60 / 60	minus	ABC02957 ABC02958 ABC33947
JLOC1	JLOC1_10058.1	1637	8e-25	1326 - 1385	100	60 / 60	plus
Harvest21	ABC02959	1472	3e-25	1313 - 1372	100	60 / 60	plus
Harvest21	ABC02955	410	3e-25	92 - 151	100	60 / 60	minus
Harvest21	ABC02954	773	3e-25	101 - 160	100	60 / 60	minus
Harvest21	ABC33947	467	2e-21	102 - 160	97	57 / 59	minus	ABC33947
Harvest35	U35_176	1218	3e-25	1058 - 1117	100	60 / 60	plus

Contig Sequence (1470 bp)

>TA32442_4513 1470 Hv_44K_v2
GNAAAAAATTGAATATCAAGNACATCGAACCCTCTCCTCTCGGCAACGCAGCAAACTACA
CCAGCAGAGCAGAGCAGAGCAGAGCATCATTCATACCCACCACACCAGACACCACTGCCC
AGATCCGAAGGAAAAGTTTCGCGCTCCACCCGACAGAACCGTTTGCGCGGTGGGGGCCGA
CGGCCATGGCGTAGCGCGCACACCGCACGGTGGCAGTATAAAGCTGCACCTGCTCCTGCA
CCGAGACGGCACACCACCATCGCAGCACTGCACTCCACTGGTGCGGTACAGAGGAGGCAA
GCAGAGGAGCAACGTGCGAGTTGCCGGCATGGCGAGGCCGTCCTTCTCCCTCCACCTGTG
CCTGGCCGTTCTGGCCTTGGCCGCCGCCGCGTCGGAGGCCGGGTTCTACGACCAGTTCGA
CGTGGTCGGCTCCGGCAACAACGTCCGCGTGAACGACGACGGCATCGCCCAGCAGGTGGC
GCTCACGCTCGACCAGGGCAACGGCGGCTCCGGCTTCAGCTCCAAGGACAAGTACCTCTA
CGGCGAGTTCAGCGTCCAGATGAAGCTCATCGGCGGCAACTCCGCCGGCACCGTCACCTC
CTTCTACCTGACGTCTGGGGAGGGCGACGGCCATGACGAGATCGACATCGAGTTCATGGG
CAACCTCAGCGGCGACCCCTACGTGATGAACACCAACGTCTGGGCCAGCGGCGACGGCAA
GAAGGAGCACCAGTTCTACCTCTGGTTCGACCCCACCGCCGACTTCCACACCTACAAGAT
CGTCTGGAACCCCAAGAACATCATATTCCAGGTGGACGACGTGCCGGTGAGGACGTTCAA
GAAGTACGACGACCTGCCGTACCCGAGCAGCCAGCCGATGACGGTGCACGCCACGCTCTG
GGACGGCAGCTACTGGGCCACCCGCCACGGCGACGTCAAGATCGACTGGACCCAGGCGCC
CTTCGTCGTCAACTACCGCGGCTACACCTCCAACGGCTGCGTCAGCAACGGCGGCTCCTC
CGCGTGCCCCGCCGGCAGCGACGCCTGGATGAGCACGGAGCTCGACGCCAAAGCCCTCGG
CACCGTCGCCTGGGCCGAGAGCAAGTACATGTCCTACGACTACTGCACCGACGGCTGGCG
CTTCCCCAACGGCTTCCCCGCCGAGTGCTCCCGCCGCAACTGATCCATCATCACTTTCTT
CTTCCTTCCTTCCCTCCTCGTCGTTGGTGTTCTTGTTTGTCCATTCGATTGGAGCGAGAC
GGACACACGTTGGCTCATTTCCCATGTAAGTACATTTTACCATGGATTTGATTGTTACAG
TGAGTGTTACAGTTACAGAGAAAGTTAAGGTGACTTCTTGTGGGTTTCTCTGCTTGGAGA
GAGAGAGAGAGAGAGACATGTGATCGATCGGTTATGTATGTATGAACAAACCATAATAAA
TTATAAATAATCCTTGCATCTCCAAAAAAG

Homology of Contig TA32442_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g13920.1	291	2e-155	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi3g18590.1	281	2e-172
Arabidopsis v10	AT5G57550.1	284	9e-92	\| Symbols: XTR3, XTH25 \| xyloglucan endotransglucosylase/hydrolase 25 \| chr5:23305055-23306384 REVERSE LENGTH=284