barSeed - Barley Seed Development Database

Probe CUST_39382_PI390587928

Source Contig U35_7465

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39382_PI390587928	Hv_44K_v2	GTGTCTTATTCCTTCAACATATGGTTATACGTCTTACATTCATGTATTAAGGTCCTCTCT	634	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2219.3	1462	2e-24	780 - 839	100	60 / 60	plus	ABC15629
MLOC	MLOC_2219.1	1547	2e-24	865 - 924	100	60 / 60	plus	ABC15629
Harvest21	ABC15629	1515	3e-25	1105 - 1164	100	60 / 60	plus	ABC15629
Harvest35	U35_7465	1045	3e-25	635 - 694	100	60 / 60	plus

Contig Sequence (1045 bp)

>U35_7465 1045 Hv_44K_v2
GCCAGAGTCAAGAAAGACGTCCAGCGTCTCCGCACAGACCTGACCGTCATGTACGCCACC
CTCCGCGAGGTACGCAACGCGGCGCGGGACCAGCTCGACGGGCAGGTCAAGCTCTGTGCC
GACCGTGTCAGAGACCTCTCAGGTGTGATGCTGCTCTTCCAGACGGCCCTGGGGGAGGGG
GACACTTGATTTCTTCGCCAGATCTGGATCCCGGGGACGACGTCGGGTCGCTATGCAAGG
CGGTGGCCTGCGGGAAGGGGAACTGCACGGTGACAGAAGTAAGTCGGAAGGATTCCAGAT
CCACCTTGCCTGATCCTTGGGGAAGATCCTAGTCATGATGAAGATGCCAGTGACCAAGTG
TTAGAAGACGAACACGAAGGGATAACAACAAGAGGACCATAATTCATGTGTTCCTGTCAA
GGATTAATTCCCAGTCCCTTTTTACAGTTCATCATCCATTGTCGGGGAAGCTTTTGTCTA
TACTTCTATTATTGATTTAAATGTCCCCTGTTCATCTTGCTTAATTATAATTTTTGGTCA
CATGACATTTTTTCAAGTCTGATGCATACATGCAAGAAGTGTGCAATTTTAAAAGTTAGT
TCCTTGCACTAAATCTCTATTGATACACTACTAAGTGTCTTATTCCTTCAACATATGGTT
ATACGTCTTACATTCATGTATTAAGGTCCTCTCTCTTTTGTATCAGCTACCCTATATGTC
CTCAACAGTGACATATACATGTCTCAAACTGCCATGGAGAAAGATTGAAGCATGCATACG
GACTTGCTGGACAAGCTGTATTTTTTGGTTGCCACGCGGATGCTCTTTGGACTACGATAT
GGACTTGAAGCCATTTGTTTTAGTGCCAAATATTACTTACTAATGCCCGCAAAGTATCAT
TGTGTATTATATTTGCTATGGAGCTATGTATGTATGGATGCTATGGAACTATATGTATAT
ATGGATGCTATGGAATTTTGGATGTATGGATGCTATGGAATTTTGATATATGGATCATGA
AATTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7465 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None