barSeed - Barley Seed Development Database

Probe CUST_39321_PI390587928

Source Contig U35_10094

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39321_PI390587928	Hv_44K_v2	AGAGTACGCTTACACGCTGCGGGTGGACGAGAAGAGCGACGTGTACAGCTTCGGCGTGGT	376	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66232.1	4081	2e-24	3441 - 3500	100	60 / 60	plus	ABC10767 ABC39782
MLOC	MLOC_66232.3	1399	2e-24	759 - 818	100	60 / 60	plus	ABC10767 ABC39782
MLOC	MLOC_66232.2	3553	2e-24	2913 - 2972	100	60 / 60	plus	ABC10767 ABC39782
JLOC1	JLOC1_43628.3	942	8e-25	292 - 351	100	60 / 60	plus
JLOC1	JLOC1_43628.2	1242	8e-25	584 - 643	100	60 / 60	plus
JLOC1	JLOC1_43628.1	3431	8e-25	2773 - 2832	100	60 / 60	plus
Harvest21	ABC19452	785	3e-25	377 - 436	100	60 / 60	plus
Harvest35	U35_10094	785	3e-25	377 - 436	100	60 / 60	plus

Contig Sequence (785 bp)

>U35_10094 785 Hv_44K_v2
ACGCTGGGGCGGATCCGGCACCGGAACATCGTGCGGCTGCTGGGGTTCGTGTCCAACCGC
GAGACCAACCTGCTGCTGTACGAGTACATGCCCAACGGCTCGCTGGGGGAGATGCTCCAC
GGCGGCAAGGGCGGGCACCTCGGGTGGGACGCCCGCGCAAGGGTGGCGCTCGAGGCTGTT
TCTTCGGCCTCTGCTACCTCCACCACGACTGCGCGCCGCGGATCATCCACCGCGACGTCA
AGTCCAACAACATCCTCCTCGACTCCGCCTTCGAGGCCCACGTCGCCGACTTCGGCCTCG
CCAAGTTCCTCGGCGGCGCCGCCGGCGCCTCCGAGTGCATGTCCGCCATCGCCGGCTCCT
ACGGCTACATCGCCCCAGAGTACGCTTACACGCTGCGGGTGGACGAGAAGAGCGACGTGT
ACAGCTTCGGCGTGGTGCTGCTGGAGCTCATCACAGGGCGGCGCCCCGTGGGCGGGTTCG
GCGACGGTGTGGACATCGTGCACTGGGTCCGCAAGGCCACAGCGGAGCTCCCTGACACCG
CTGCGGCTGTCCTCGCCGTCGCCGACTGCCGCCTCTCCCCTGAGCCCGTGCCGCTGCTGG
TCGGGCTCTACGATGTTGCCATGGCCTGCGTCGAGGAGGCGAGCACCGACCGGCCAACCA
TGCGCGAGGTCGTGCACATGCTCTCGCAGCCCGCCCTTGTTGCTCCCACCGCCGTCGTCG
ATGAGAACACGGCCCGCCCCGACGACGACCTCATCCTCTCCTTCTGACGGGCATGTCGGC
GATGA

Homology of Contig U35_10094 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g50340.1	995	3e-87	protein\|receptor protein kinase CLAVATA1 precursor, putative, expressed
Brachypodium v1_2	Bradi1g30160.1	995	4e-109
Arabidopsis v10	AT1G75820.1	980	2e-83	\| Symbols: CLV1, FAS3, FLO5, ATCLV1 \| Leucine-rich receptor-like protein kinase family protein \| chr1:28463631-28466652 REVERSE LENGTH=980