barSeed - Barley Seed Development Database

Probe CUST_39306_PI390587928

Source Contig U35_22075

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39306_PI390587928	Hv_44K_v2	AGATGTGGCCTGGGTGCTGATCATCATGGCAAATTGTTCCCCGTACCAAAGTAGTTTTTT	1148	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.698	1.689	1.133	0.666	0.253	0.299
Raw	2726.127	4199.880	2472.047	2291.696	306.056	392.744

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19714.1	4313	3e-22	94 - 152	98	58 / 59	minus	ABC15698
JLOC1	JLOC1_13662.4	4458	1e-22	4162 - 4220	98	58 / 59	plus
JLOC1	JLOC1_13662.3	4440	1e-22	4144 - 4202	98	58 / 59	plus
JLOC1	JLOC1_13662.2	4427	1e-22	4131 - 4189	98	58 / 59	plus
JLOC1	JLOC1_13662.1	4406	1e-22	4110 - 4168	98	58 / 59	plus
Harvest21	ABC15698	1259	3e-25	1149 - 1208	100	60 / 60	plus	ABC15698
Harvest35	U35_22075	1259	3e-25	1149 - 1208	100	60 / 60	plus

Contig Sequence (1259 bp)

>U35_22075 1259 Hv_44K_v2
AAAGGGTTGCTTATGAGAGGAGATGAAAAAGTGAAGGAAATTTCACTGTTTCTTCTTAAA
TGCCTGGTCTTAGATCAGATTTCGGCGAACATTCCACCCCACCAGGAAGAACACAATGAC
AACCTCTCGTCAGATGCTTCTCTTGCAACAGCTGCAGCTGGTGCATTCCATGTGATGATG
AGTGATTCAGAAGTCTGCCTAAATAAAAAGTTCCATGCAAGAATAAAGTTTTTATATAAG
CAGCGTTTTTTCTCAATACTGATGCCAATTTTTCTCTCTAAAATTAAGGAGACCCCGGAG
ATGACAACAAAATTGGTGATGTATCGAGCATTTGGACATATTATTTCTAATGCTCCAGTG
TCAGCAGTTATAACAGAAGCCCATCAGATTTTGCTCGTCATGGTTGATATCTTAGCTAAA
TTGAGCATGGATATTCAGGATAAAGATCTGGTATATAGTTTGTTGCTCGTCTTATCTGGA
ATGTTGATGGATGAAAAAGGCAAAGAATGCATTCTGGAAAATATGAACATTATTGTCAGT
GTACTTGCACAACTTGTTTCCTATCCTCACATGATGGTTGTTCGGGAGACGGCCTTGCAA
TGTTTTGTTGCCATGTCCAGCTTTCCCCACTCAAAAGTTTATCGCATGCGACCACAGGTC
TTACAAGCAGCAATCAAGGCTCTTGATGATAAGAAAAGGGTTGTTCGCCAAGAGGCTGTT
CGATGTCGACAAACATGGCAATCATCATTTGCTTAAGGTAGTCTTTCTCCTGCCACTGAT
CATAGTTCGGATGCACTCACTGAACAGAGTGTGTTGTAGAGCAAGTATGGAAGATGTGTG
ATAGGCTGTGGTAGCGCTTAGGGTGGTAGAGTACAATGCGGCTCCTTCCTCCTTTGAAAT
GCTTTTGGACTGTAAGTTGTGGCAGGAGCGTAGTTTTTCGGATGAAATTTGGGGAACAAC
AGTTGGATGGTGTATGCCGGTGCATTGGATACAATCTGGCTGACCGCCCTTTTGTCCCCC
TTTCCTTGTATTTATCATGAATGGCCTAGGATCATAGTTGCATTTATTTGTACGACCAGC
TCGCGAATGTATCTTTGGGTCTCCTTATCCATTGCATTTGTGTCTCAAGACGGGAGAATG
CATGAGTCAGATGTGGCCTGGGTGCTGATCATCATGGCAAATTGTTCCCCGTACCAAAGT
AGTTTTTTTAAGCCGTGAGTTCCCCTGGTATGCGCAGCTATATAACTATATATGGTTGT

Homology of Contig U35_22075 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi1g55667.1	1143	5e-131
Arabidopsis v10	AT5G48120.1	1134	3e-60	ARM repeat superfamily protein \| chr5:19508210-19514774 REVERSE LENGTH=1134