- Probe CUST_39300_PI390587928
- Source Contig U35_34053
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39300_PI390587928 | Hv_44K_v2 | TCCAGTACTGGATGCCGGATGGCCCGATGTGAATTTGCCATAAGCAATAGAACCTTTTTT | 629 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364013 | 3324 | 2e-24 | 1485 - 1544 | 100 | 60 / 60 | minus | ABC00120 ABC00610 ABC00897 ABC00945 ABC18158 ABC49781 |
| MLOC | AK248519.1 | 1360 | 2e-24 | 1156 - 1215 | 100 | 60 / 60 | plus | ABC00120 ABC00610 ABC00897 ABC00945 ABC49781 |
| MLOC | AK248545.1 | 1099 | 2e-24 | 888 - 947 | 100 | 60 / 60 | plus | ABC00120 ABC00610 ABC00897 ABC00945 ABC49781 |
| MLOC | MLOC_43331.2 | 994 | 2e-24 | 927 - 986 | 100 | 60 / 60 | plus | ABC00120 ABC00610 ABC00897 ABC00945 ABC49781 |
| MLOC | MLOC_43331.1 | 898 | 2e-24 | 815 - 874 | 100 | 60 / 60 | plus | ABC00120 ABC00610 ABC00897 ABC00945 ABC49781 |
| JLOC1 | JLOC1_28006.2 | 1341 | 8e-25 | 814 - 873 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28006.1 | 1584 | 8e-25 | 1057 - 1116 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC49395 | 1529 | 3e-25 | 1324 - 1383 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00986 | 597 | 3e-25 | 89 - 148 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00945 | 648 | 3e-25 | 472 - 531 | 100 | 60 / 60 | plus | ABC00945 |
| Harvest21 | ABC00897 | 1099 | 3e-25 | 899 - 958 | 100 | 60 / 60 | plus | ABC00897 |
| Harvest21 | ABC00495 | 1774 | 3e-25 | 1136 - 1195 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC49781 | 185 | 1e-23 | 74 - 133 | 98 | 59 / 60 | minus | ABC49781 |
| Harvest35 | U35_47883 | 1529 | 3e-25 | 1324 - 1383 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_35267 | 808 | 3e-25 | 141 - 200 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_34053 | 694 | 3e-25 | 630 - 689 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_371 | 1119 | 3e-25 | 899 - 958 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_194 | 2201 | 3e-25 | 1136 - 1195 | 100 | 60 / 60 | plus |
Contig Sequence (694 bp)
>U35_34053 694 Hv_44K_v2 CCTTCCAGATGATGCTCGAGCGGCCGCTCAAGAACCAATAGTCTTTGCTGATCCGCTGTT TTCTCTAGCTCCCACGAGTCTTTAGCTGCACCGACCGATCTCGATCATGGAGGATGAGAG GAGCACCCAGTCATACCAGGGAGCTGAGGCCGATCAGGTGGAGGTGACGGACAGGGGCCT ACTCGGCAACCTCCTCGGCAAGAAGAAGGAGGAGGAGGACAAGAAGAAGGAGGAAGAGCT GGTCACCGGCATGGAGAAGGTCTCCGTGGAAGAGCCCGAGGTTAAGGAGGATGGCGAGAA GAAGGAGACTCTCTTCTCCAAGCTGCACCGATCCAGCTCCAGCTCCAGCTCGTCTAGTGA CGAGGAGGAGGAGGAGGAGGTCATCGATGAGAACGGTGAGGTGATCAAGAGGAAGAAGAA GAAGGGTCTCAAGGAGAAGCTCAAGGAGAAGCTGCCAGCGGCCGCTCAAGCTCGTCGGCG GCCACTACGACTTCGTCTCCGGCAAGTTCGAAACATGGGAGCAGTAAATCTTCCCCACCG GTTAACTCCGACATATACAAACGTACATATATCAAGATATCGTCCGATCGATGTGAATGC AATGCCATGGGAGTGCGTACCCGTTATTGTCCAGTACTGGATGCCGGATGGCCCGATGTG AATTTGCCATAAGCAATAGAACCTTTTTTTCTTC
Homology of Contig U35_34053 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |