barSeed - Barley Seed Development Database

Probe CUST_39234_PI390587928

Source Contig U35_5856

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39234_PI390587928	Hv_44K_v2	TGGTGAGCACCACATGTATCTACTGAAATTACGTGTATGCTAAGCTGCGTTGTACGCAAA	923	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249780.1	2148	7e-23	2053 - 2109	100	57 / 57	plus	ABC12483 ABC16350
MLOC	AK250344.1	1096	7e-23	947 - 1003	100	57 / 57	plus	ABC12483 ABC16350
MLOC	MLOC_29671.2	1110	7e-23	48 - 104	100	57 / 57	minus	ABC12483
MLOC	MLOC_29671.1	2289	7e-23	250 - 306	100	57 / 57	minus	ABC12483
JLOC1	JLOC1_19717.2	1307	4e-23	1034 - 1090	100	57 / 57	plus
JLOC1	JLOC1_19717.1	1307	4e-23	1034 - 1090	100	57 / 57	plus
JLOC1	JLOC1_19716.1	2269	4e-23	248 - 304	100	57 / 57	minus
Harvest21	ABC12483	997	3e-25	924 - 983	100	60 / 60	plus	ABC12483
Harvest35	U35_5856	997	3e-25	924 - 983	100	60 / 60	plus

Contig Sequence (997 bp)

>U35_5856 997 Hv_44K_v2
CGACTTTACGCAGCCAGCAGAGAGTAGAGAGAGAGAAAGAAAGAGGGGAGGAGGAGGAAG
AAGGAAGATGGGTCGTGGGAAGGTGGAGATGAGGCGGATCGAGAACAAGATAAGCCGGCA
GGTGACCTTCGCCAAGCGCCGGAACGGGCTGCTCAAGAAGGCCTACGAGCTCTCGCTGCT
CTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCGGCCGCGGCCGCCTCTTCGAGTTCTC
AAGCTCCTCATGCATGTACAAAACTCTTGAGAGATACCGCACCTGCAACTCCAACTCACA
GGAAGCAACACCTCAGGTAGAAAATGAGATTAATTACCAGGAATATTTAAAGCTGAAGAC
AAGAGTTGAATTTCTTCAAAGTTCACAAAGAAATATTCTCGGTGAGGATCTGGGCCCACT
TAGCATGAAGGAGCTTGACCAGATAGAGAACCAAATAGATGCATCCCTCCAGCATATCAG
GTCAAAAAAGAATCAAGTATTACTCGATCAGCTATTTGAACTGAAAAGTAAGGAGCAAGA
ATTGCAGGATGAAAACAAAGACTTGAGGAAGAAGCTGCAAGACACCACCACCACCAGCTG
CGGAGAGAATGCGGTCCATATGTCCTGGCAAGACGGTGGGCAGAGTAGCTCCAGAAGGCA
TGCCACTGAGCCTTACCCGGGAGTACTCCAACACCCGGAGCATGATACCTCCATGCAAAT
TGGGTATCCTCAGGCCTACATGGACCAGCTGAACAACAGAGATCACATGGCTTCACAGCG
CCCTGGTGGACATCCTGGATCGTCTGCAGGTTGGATATGATTAACTGATGTGGAGCTGCG
TCCCGTCACCGTGTACTGTAGCTATTGTATTTGGACTTGAGTGACAATTGCTATGTTCTT
TTGTGTGTGTACCGGAGTTGTGGTGGTGAGCACCACATGTATCTACTGAAATTACGTGTA
TGCTAAGCTGCGTTGTACGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5856 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g11614.1	258	8e-107	protein\|OsMADS1 - MADS-box family gene with MIKCc type-box, expressed
Brachypodium v1_2	Bradi1g69890.2	248	7e-138
Arabidopsis v10	AT5G15800.2	262	7e-65	\| Symbols: SEP1, AGL2 \| K-box region and MADS-box transcription factor family protein \| chr5:5151594-5153767 REVERSE LENGTH=262