barSeed - Barley Seed Development Database

Probe ABC12483

Source Contig ABC12483

barSeed

Links

Affymetrix Source Sequence (997 bp)

>ABC12483 997
CGACTTTACGCAGCCAGCAGAGAGTAGAGAGAGAGAAAGAAAGAGGGGAGGAGGAGGAAG
AAGGAAGATGGGTCGTGGGAAGGTGGAGATGAGGCGGATCGAGAACAAGATAAGCCGGCA
GGTGACCTTCGCCAAGCGCCGGAACGGGCTGCTCAAGAAGGCCTACGAGCTCTCGCTGCT
CTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCGGCCGCGGCCGCCTCTTCGAGTTCTC
AAGCTCCTCATGCATGTACAAAACTCTTGAGAGATACCGCACCTGCAACTCCAACTCACA
GGAAGCAACACCTCAGGTAGAAAATGAGATTAATTACCAGGAATATTTAAAGCTGAAGAC
AAGAGTTGAATTTCTTCAAAGTTCACAAAGAAATATTCTCGGTGAGGATCTGGGCCCACT
TAGCATGAAGGAGCTTGACCAGATAGAGAACCAAATAGATGCATCCCTCCAGCATATCAG
GTCAAAAAAGAATCAAGTATTACTCGATCAGCTATTTGAACTGAAAAGTAAGGAGCAAGA
ATTGCAGGATGAAAACAAAGACTTGAGGAAGAAGCTGCAAGACACCACCACCACCAGCTG
CGGAGAGAATGCGGTCCATATGTCCTGGCAAGACGGTGGGCAGAGTAGCTCCAGAAGGCA
TGCCACTGAGCCTTACCCGGGAGTACTCCAACACCCGGAGCATGATACCTCCATGCAAAT
TGGGTATCCTCAGGCCTACATGGACCAGCTGAACAACAGAGATCACATGGCTTCACAGCG
CCCTGGTGGACATCCTGGATCGTCTGCAGGTTGGATATGATTAACTGATGTGGAGCTGCG
TCCCGTCACCGTGTACTGTAGCTATTGTATTTGGACTTGAGTGACAATTGCTATGTTCTT
TTGTGTGTGTACCGGAGTTGTGGTGGTGAGCACCACATGTATCTACTGAAATTACGTGTA
TGCTAAGCTGCGTTGTACGCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK250344.1	1096	0.0	42 - 1003	100	962 / 962	CUST_39234_PI390587928	ABC12483 ABC16350
AK249780.1	2148	2e-160	67 - 376	99	309 / 310	CUST_39234_PI390587928	ABC12483 ABC16350
MLOC_29671.3	1180	0.0	1 - 632	99	631 / 633	None	ABC12483
MLOC_29671.2	1110	0.0	48 - 697	98	649 / 661	CUST_39234_PI390587928	ABC12483
MLOC_29671.4	1064	0.0	1 - 599	100	599 / 599	None	ABC12483
MLOC_29671.1	2289	0.0	250 - 657	100	408 / 408	CUST_39234_PI390587928	ABC12483
MLOC_29398.1	904	6e-96	162 - 654	80	408 / 509	None	ABC12483
MLOC_53587.2	4601	5e-87	558 - 877	85	275 / 323	None	ABC12483 ABC16350
MLOC_69506.1	2326	6e-86	2154 - 2326	100	173 / 173	None	ABC12483 ABC16350
MLOC_53587.1	5357	2e-80	558 - 805	89	220 / 248	None	ABC12483 ABC16350
MLOC_20713.1	524	1e-78	231 - 448	91	203 / 223	None	ABC12483
MLOC_20713.2	2342	1e-78	72 - 289	91	203 / 223	None	ABC12483
MLOC_53585.1	371	1e-68	143 - 345	90	183 / 203	None	ABC12483 ABC16350