barSeed - Barley Seed Development Database

Probe CUST_39222_PI390587928

Source Contig U35_5868

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39222_PI390587928	Hv_44K_v2	ACAAGATCAGTGCTTACCATTGCTTTCCAGTTCTCATATGAGAACCACCTTCGAGAGAGT	864	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364215	3141	2e-24	2272 - 2331	100	60 / 60	plus	ABC13590 ABC18488
MLOC	MLOC_33978.3	1949	7e-23	692 - 751	98	59 / 60	minus	ABC13590 ABC18488
MLOC	MLOC_33978.2	2836	7e-23	777 - 836	98	59 / 60	minus	ABC13590 ABC18488
MLOC	MLOC_33978.1	2816	7e-23	816 - 875	98	59 / 60	minus	ABC13590 ABC18488
JLOC1	JLOC1_21944.1	2827	4e-23	1945 - 2004	98	59 / 60	plus
Harvest21	ABC16862	732	1e-23	537 - 596	98	59 / 60	plus
Harvest35	U35_5868	1061	3e-25	865 - 924	100	60 / 60	plus

Contig Sequence (1061 bp)

>U35_5868 1061 Hv_44K_v2
GAGGTCCTTAGACCACTTTATGAGTCTCCAAAGATTCTTGCGCAGAAGATGACAATTGCT
GCTCTGCGTCACATTAGGCAGATTGCACATGAATCAAGTGGAGAAATGCCCTATGGAGGG
GGGCGCCAGCCAGCAGTTTTAAGAACATTTAGTCAGAGATTGAGCAGAGGTTTCAATGAT
GCTGTTAATGGATTTCTGGATGATGGCTGGTCACTGATGAGCAGTGATGGTGCTGAGGAT
GTTACAATTGCTATCAACTCATCTCCAAACAAACTTGCTGGAACTCATGTCAACCCCTCC
CAGATGTTTTCTGCAATTGGGGGTGGCGTCTTATGTGCCAAGGCTTCAATGTTGCTGCAG
AATGTACCGCCTGCTCTACTAGTACGGTTTCTGAGGGAGCATCGCTCTGAATGGGCTGAT
CCTGGTGTTGATGCTTATTCCGCCGCTGCTTTGCGAGCTAGTCCTTATGCAGTTCCTGGT
CTACGAGCGAGTGGGTTTATGGGCAGTCAGGTTATCCTGCCACTTGCACATACCTTAGAG
CATGAAGAGTTCTTGGAGGTTATTAGACTCGAGGGACACAGTCTCTGTCATGATGAAGTT
GTTCTATCAAGAGATATGTATCTTCTGCAGTTATGCAGCGGTGTCGATGAGAATGCTGCT
GGTGCTTGTGCACAGCTTGTCTTTGCGCCGATTGATGAATCGTTTGCTGATGATGCTCCA
CTGCTACCCTCGGGCTTCCGTGTGATACCACTTGATGCCAAGACGGATGCACCGTCTGCA
ACACGTACACTTGACCTTGCATCCACTCTTGAGGTTGGACCTGGTGGGACTCGTGCTCCT
AGTGACGCATCCAGCACCAGCAACACAAGATCAGTGCTTACCATTGCTTTCCAGTTCTCA
TATGAGAACCACCTTCGAGAGAGTGTCGCGGCAATGGCGAGGCAGTATGTGAGGACTGTG
GTGGCATCAGTGCAGAGGGTGGCCATGGCAATTGCACCTTCTCGTCCTGGTGGACAGATC
GAAATGAAGAACCCTGCAGGATCCCCTGAGGCTCACACGCT

Homology of Contig U35_5868 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g43930.2	860	0.0	protein\|START domain containing protein, expressed
Brachypodium v1_2	Bradi1g13910.1	862	0.0
Arabidopsis v10	AT2G34710.1	852	1e-161	\| Symbols: PHB, ATHB14, ATHB-14, PHB-1D \| Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein \| chr2:14639548-14643993 REVERSE LENGTH=852