barSeed - Barley Seed Development Database

Probe ABC13590

Source Contig ABC13590

barSeed

Links

Affymetrix Source Sequence (665 bp)

>ABC13590 665
AGGTTTCACACCGGGTCGTAACTCCTTTGCACGGAGTCACAGAGCGCGAACGCATCCCTG
AAAGCGCTGTGGCAGCACTCGGATTCAATCATGTGCTGTTCCCTGAAGGCAGCTCCTGTG
TTCACCTTCGCCAACCAGGCCGGCCTGGACATGCTGGAGACGACGCTGATTGCGCTCCAG
GACATCTCGCTGGAGAAGATCCTCGACGACGATGGCCGCAAGGCGCTGTGCTCCGAGTTC
CCCAAAATCATGCAGCAGGGTTTCGCGTACCTCCCAGGCGGCGTGTGCGTGTCGAGCATG
GGGCGGCCGGTGTCGTACGAGCAGGCGGTGGCGTGGAAGGTGCTGGGCGACGACGACGCG
CCGCACTGCCTCGCCTTCATGTTCGTCAACTGGTCCTTCGTGTAGCAGCTTGTAGCCAGC
ATTAGAAGTGATGAGCCACCTCGGGCTACCGTTCGTTTGCAAACTGCGTCTCCGAAAAAC
CATTGTGTGCCGGCGCTCGGTCGCTTTTGTCTTGTGTCAAGATTCAAGAACCCTTTCAGT
TTTATCATCATCATCATCCATTCCATCACCCTGTGGAACAGACGCACCTACAGTACTTTG
TTGTTGTTGTTGGCCACTGTATGTATGAATGGATTGGCGTTGCGTGTCAAAAAAAAAAAA
AAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_33978.1	2816	0.0	5 - 653	99	645 / 649	CUST_39222_PI390587928 CUST_12378_PI390587928 CUST_292_PI390587928	ABC13590 ABC18488
AK364215	3141	0.0	2494 - 3141	99	642 / 648	CUST_39222_PI390587928 CUST_12378_PI390587928 CUST_292_PI390587928	ABC13590 ABC18488
MLOC_33978.2	2836	0.0	1 - 614	99	610 / 614	CUST_39222_PI390587928 CUST_12378_PI390587928	ABC13590 ABC18488
MLOC_33978.3	1949	0.0	1 - 529	99	525 / 529	CUST_39222_PI390587928	ABC13590 ABC18488
MLOC_58644.3	3085	1e-85	167 - 482	85	269 / 316	CUST_32624_PI390587928 CUST_17085_PI390587928	ABC13590 ABC18488
MLOC_58644.2	3067	1e-85	210 - 525	85	269 / 316	CUST_32624_PI390587928 CUST_17085_PI390587928	ABC13590 ABC18488
MLOC_58644.1	3175	1e-85	217 - 532	85	269 / 316	CUST_32624_PI390587928 CUST_17085_PI390587928	ABC13590 ABC18488