barSeed - Barley Seed Development Database

Probe CUST_39194_PI390587928

Source Contig U35_5896

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39194_PI390587928	Hv_44K_v2	AGCATCGTATGCGGTCGCCGGGTGATAATGTAGAAAATTAACAGATATTGTGAACCTTGC	1030	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.045	1.738	1.682	0.937	0.359	0.515
Raw	118.336	301.113	258.916	205.943	30.818	47.428

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74565.5	3112	2e-24	39 - 98	100	60 / 60	minus	ABC12572
MLOC	MLOC_74565.4	3870	2e-24	39 - 98	100	60 / 60	minus	ABC12572
MLOC	MLOC_74565.6	2940	2e-24	16 - 75	100	60 / 60	minus	ABC12572
MLOC	MLOC_74565.3	2991	2e-24	51 - 110	100	60 / 60	minus	ABC12572
MLOC	MLOC_74565.1	3553	2e-24	53 - 112	100	60 / 60	minus	ABC12572
MLOC	MLOC_74565.2	3819	2e-24	53 - 112	100	60 / 60	minus	ABC12572
JLOC1	JLOC1_49698.6	3035	8e-25	2827 - 2886	100	60 / 60	plus
JLOC1	JLOC1_49698.5	3272	8e-25	3064 - 3123	100	60 / 60	plus
JLOC1	JLOC1_49698.4	3218	8e-25	3010 - 3069	100	60 / 60	plus
JLOC1	JLOC1_49698.3	3048	8e-25	2840 - 2899	100	60 / 60	plus
JLOC1	JLOC1_49698.2	3275	8e-25	3067 - 3126	100	60 / 60	plus
JLOC1	JLOC1_49698.1	3541	8e-25	3333 - 3392	100	60 / 60	plus
Harvest21	ABC12572	1112	3e-25	1031 - 1090	100	60 / 60	plus	ABC12572
Harvest35	U35_5896	1112	3e-25	1031 - 1090	100	60 / 60	plus

Contig Sequence (1112 bp)

>U35_5896 1112 Hv_44K_v2
CGCTCATCCTCGTCGCCGTCATGTTCGTGTGGCACCACACCACCGTCAAGAAGTACGAGT
TCGACCTCCACAACAAGGTCACCATGGAGTGGCTCCTCGCGCTCTGCGACAGGCTGGGCA
TGGTCCGCGTCCCCGGCATCGGCCTGGTCTACACCGACCTCACCTCCGGCGTGCCCGCCA
ACTTCTCGCGCTTCGTCACCAACCTCCCCGCGTTCCACCGCGTGCTCGTCTTCGTCTGCG
TCAAGTCCGTGCCCGTGCCCCGGGTGCTCCCCGCCGAGCGCTACCTCGTCGGCCGCGTCG
GCCCGGCGGGCCACCGCTCGTACCGCTGCATCGTGCGCTACGGGTACCGGGACGTGCACC
AGGACGTGGACTCGTTTGAGACGGAGCTCGTCGAGAGCCTCGCGTCCTTCATCCGGCTCG
ACGCGCTGTTCCGGTGCAGCGACGCCCGCAGCGACGCCGACTACGAGCGGGAGAACGCAT
TCACCGTCATCGGCAGCAACCCGCTCCGGCGCCGCATCAGCTACGACGACACCCACGACA
GCGCCTCGTCCGTGGAGATACGCGTGGACAGCATGACAGGCAGCGGGACGAATACCGTAG
AGCTCGCGGCCGTGCCGACGGCGGCGCGGGTTGTGAAGAGGGTGAGGTTCCTCGTGGACC
CCGGGAGCCCCGAGGTGGAGGACAAGCAGATGCTGGAGGAGCTCCACGAGCTGTGCGAGG
CGAGGGAGGCCGGCACGGCCTTCATCATGGGCCACTCCCACGTGAAGGCCAAGCCCGGGT
CGTCGCTGCTCAGGAGGTTGGCCATCGGGTACGGGTATAACTTCCTGCGCCGGAACTGCC
GCGGCCCGGACGTCGTGCTCCGCGTGCCGCCGGCGTCGCTGCTCGAGGTCGGCATGGTCT
ACGTGCTGTGATTCACAGACACGGGGCTTCTGTTCTGTCTCTAGCTTCCGGACATGCTGC
TGTAAATTGTAACGTGACGGCCGGCATGACGCGTGATGGAAATCTTTTATGTTTTGATTG
ATGAAATGCAAGCATCGTATGCGGTCGCCGGGTGATAATGTAGAAAATTAACAGATATTG
TGAACCTTGCAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_5896 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48130.4	636	5e-162	protein\|potassium transporter, putative, expressed
Brachypodium v1_2	Bradi1g17830.1	774	2e-148
Arabidopsis v10	AT2G40540.1	794	2e-116	\| Symbols: KT2, ATKT2, SHY3, KUP2, ATKUP2, TRK2 \| potassium transporter 2 \| chr2:16931445-16934516 FORWARD LENGTH=794