barSeed - Barley Seed Development Database

Probe CUST_39144_PI390587928

Source Contig U35_9953

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39144_PI390587928	Hv_44K_v2	TTTAAGGAGTAGAAACTCGAATCAAGGAGACCACAACTCTACGGCAATGGCGACCAAGAT	24	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38677.1	890	2e-24	150 - 209	100	60 / 60	plus	ABC05216 ABC05217
JLOC1	JLOC1_25170.1	940	8e-25	47 - 106	100	60 / 60	plus
Harvest21	ABC19493	484	3e-25	25 - 84	100	60 / 60	plus
Harvest35	U35_9953	485	3e-25	25 - 84	100	60 / 60	plus

Contig Sequence (485 bp)

>U35_9953 485 Hv_44K_v2
AGCGATCGACAAGAAAGGGAGCAGTTTAAGGAGTAGAAACTCGAATCAAGGAGACCACAA
CTCTACGGCAATGGCGACCAAGATCTACATCGTCTACTACTCGACCTGGGGACACGTCGC
CACGCTTGCGGAGGAGATTAAGAAGGGCGCCGGCTCCGTCCCCGACGTCGAGGTCACCAT
CTGGCGGGTGCCGGAGACGCTCCCGGAGGATGTGCTGGGGAAGATGCACGCCGCGCCGGG
GCGTGAGGACCACCCGGTCATCACGGCGAGGCAGCTGGCCGAGGCCGACGGCATCCTGTT
CGGCTTCCCGACGCGGTTCGGCATGATGGCCGCGCAGATGAAGGCCTTCTTTGACTCCAC
AGGCGGCCTCTGGCAGCAGCAGTCCCTCGCCGGCAAGCCCGCGGCCGTTTTCTTCGCCAC
GGGCACCCAGGGCGGCGGCCAGGAGACCACAGCGCTCACCGCCGTGACGCAGCTGACGCA
CCACG

Homology of Contig U35_9953 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g42190.1	206	4e-55	protein\|NADPH-dependent FMN reductase domain containing protein, expressed
Brachypodium v1_2	Bradi1g59450.1	205	2e-62
Arabidopsis v10	None