barSeed - Barley Seed Development Database

Probe CUST_39139_PI390587928

Source Contig U35_9958

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39139_PI390587928	Hv_44K_v2	ATCTTGCAAGTATTCTACACCGAATGGGTGCCTTTCAGATTCACCTTTTCGCGAATCCGA	336	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366425	1689	2e-24	391 - 450	100	60 / 60	plus	ABC12214 ABC47567
MLOC	MLOC_24076.1	770	2e-24	260 - 319	100	60 / 60	minus	None
Harvest21	ABC20628	632	3e-25	337 - 396	100	60 / 60	plus
Harvest35	U35_9958	632	3e-25	337 - 396	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_9958 632 Hv_44K_v2
CCGCTTGCCCCCCTCTCAGTCCCCACCCAGCGTCTTCATCGTCTCCGCCCGCCGCCGTCG
CCTCTTCTTCCCCCACTCCGGCAGGAAAGAAGAAGGGGGAGAGCGCGAGGAGATGCAGCC
CAAGATCAACACGTTCTTCAAGCGCCAGGTCACGGGGCCGGATCCGAGCAGGTTCTTCTT
CCCTTTCCCCGCTTGAAGCCGATCACTGCTCGCACCAAACCTCGCCGGTTCCGAGCCTAC
CCTTACAACTGATGCAGAATTATCCTCCGACGCGAAATCTTGACCTGTGTTCGTTCTCAT
TTCCTTCCAAGTGGACGGCCGTTCGATGCTTCCAAAATCTTGCAAGTATTCTACACCGAA
TGGGTGCCTTTCAGATTCACCTTTTCGCGAATCCGACTGATCCGTGTCGATGGTTTTGGG
CAGCGAGGCGACGGAGGCGAAGAGGCCCAAGAGCTGCGGGGACGGCAAGGTCCTCAACAA
GAAGAGGAACTACGGGCAGTTCCACCTGGAGCTGGGGCAACCTGATTTCCTCCTCCACAT
GTGCGCGGTCTGCGGCATGATGTACGCCCGCGGCAACGACGATGACGAGAAGGTTCACAG
GGCCTACCACAAGAGCTACTTCGAGGGCGTCC

Homology of Contig U35_9958 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None