barSeed - Barley Seed Development Database

Probe CUST_39109_PI390587928

Source Contig U35_9992

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39109_PI390587928	Hv_44K_v2	CCTGATATATCTCTAGAGAAAGAAAGGATTCCCATATGCGTGATCAACACAATTGATGAC	509	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59632.1	4059	2e-24	2496 - 2555	100	60 / 60	plus	ABC17850 ABC19513
MLOC	MLOC_59632.2	4173	2e-24	2610 - 2669	100	60 / 60	plus	ABC17850 ABC19513
JLOC1	JLOC1_38817.1	4096	8e-25	2532 - 2591	100	60 / 60	plus
Harvest21	ABC20296	660	3e-25	510 - 569	100	60 / 60	plus
Harvest35	U35_9992	660	3e-25	510 - 569	100	60 / 60	plus

Contig Sequence (660 bp)

>U35_9992 660 Hv_44K_v2
GTGGTGATGAATTTCATTTTAGAGTTGAGTTATCGATAGTCGGACTACATCGACTTTATC
AAGGAGGCATTGACTCTGCCATTGTGGATGGTACCCGCATTGCAATAAGCATCGTCGCTT
CCGGTGGGTATCCCGATGAGTTGTCTAGCTCGGACGAGTTAATATATACCGGCTCCGGAG
GTAAGGCCACCGGCAAGAAGGAGGCAGAGGATCAAAAGCTTAAGGGTGGTAATCTTGCCA
TGAAGAATTGCATCAAAACTAAGACTCCGGTCCGAGTGATTCATGGGTTCAAAGGTCAAA
GTAGAAGTGAAGTCGGGCATTCTAAATCCAAGCAAATATCAACATACACTTATGATGGGT
TGTATGTGGTGGTGGATTGTTGGCAAGAAGGAGCAAGTGGCTCGATGGTCTTCAAGTACA
AGTTAAAAAGGATCCCGGGTCAACCTGAATTAGCTTTACACATAGTCAGGGAGACAAGGA
TGTCTAAAGTTCGTAAAGGTCTTCGCTGTCCTGATATATCTCTAGAGAAAGAAAGGATTC
CCATATGCGTGATCAACACAATTGATGACATGCAGCCAACACCATTTGAGTATATCACCA
AAGTCATATATCCACCGTCATATGCAAAAGAACCTCCCGCAGGCTGTGATTGCACTGACG

Homology of Contig U35_9992 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g19830.1	1202	6e-105	protein\|histone-lysine N-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi4g28792.1	1164	5e-128
Arabidopsis v10	AT2G35160.1	794	5e-58	\| Symbols: SUVH5, SGD9 \| SU(VAR)3-9 homolog 5 \| chr2:14823562-14825946 FORWARD LENGTH=794