barSeed - Barley Seed Development Database

Probe CUST_39023_PI390587928

Source Contig U35_20119

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39023_PI390587928	Hv_44K_v2	AGGATATCACATTAGTTTTACAGTAATGCAATATACCGCTGGGGGCTTGCCCAGAACAAA	668	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366302	2703	7e-23	2639 - 2695	100	57 / 57	plus	ABC11858 ABC11859
MLOC	MLOC_15606.3	2601	7e-23	2540 - 2596	100	57 / 57	plus	ABC11858 ABC11859
JLOC1	JLOC1_10715.3	2794	4e-23	2407 - 2463	100	57 / 57	plus
JLOC1	JLOC1_10715.2	3260	4e-23	2873 - 2929	100	57 / 57	plus
JLOC1	JLOC1_10715.1	2928	4e-23	2541 - 2597	100	57 / 57	plus
Harvest21	ABC11859	693	3e-25	634 - 693	100	60 / 60	plus	ABC11859
Harvest35	U35_20119	728	3e-25	669 - 728	100	60 / 60	plus

Contig Sequence (728 bp)

>U35_20119 728 Hv_44K_v2
CGAGGGGCACACTTTGAGCCGTGCTGCTCTAACGATGAGTGAGAGCCCGATATTTCTTCT
GGATGCGTTTACCAACCTTATCGTTTACTATTCATCGACGGCTGATCCATCACTTCCTTT
TCCTCCACCCCATGACTGTCTTTTGAGAACAAAGATTAACGCGCTGAAACAGGACAGGTG
TATCACACCAAAGCTTACGTTTGTGCGTGGAGGACAGGACGATTCGTCACTGTTTGAGAA
CTATCTTATTGAAGAGCAAGATGTTGATGGTTCGGGGTATGCAAGTGGTAATGGTTTTAT
ATCATTCCGTGAGGGTATAAGGAATGAAGTGGCAGAAATCCTCAAGGAAGAAAGTGGCAG
CTAGCTGCCTAGCTTCTGACTGCTATGGCCCTGTGGGTTCCGAAGATGGTGTAGATTGTG
TCAAGAGCTCCTTTTTAACCTTTTGGCGTAGACTGTTAACTTTACTCGCCTAAAATTGAT
AGAGATCATGGAGTAATAAGGAGGGGAGGTTTGTTTTCATCTTACAGTAGTTGCTTGTGT
CAATACCAGAATAGCTCAATGTTGTAGGGTGGTCTTTCAGAGTAAAACCTTCTATTCTTC
TATTTACTGTACATCTCATATCGGTTGCTTTTTCACCTTTTCTGACAGTAGCAAAGATAC
TCATGAAAAGGATATCACATTAGTTTTACAGTAATGCAATATACCGCTGGGGGCTTGCCC
AGAACAAA

Homology of Contig U35_20119 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g37120.1	748	2e-54	protein\|sec23/Sec24 zinc finger family protein, expressed
Brachypodium v1_2	Bradi2g23950.1	747	7e-65
Arabidopsis v10	None