barSeed - Barley Seed Development Database

Probe CUST_39008_PI390587928

Source Contig U35_32107

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39008_PI390587928	Hv_44K_v2	GGATATCAAGGAACTGTTTTCTGAGATGGGTGATATCCAGCGCTACTCCATTAACTATGA	385	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56864.2	1126	2e-24	633 - 692	100	60 / 60	minus	ABC12636 ABC28988
MLOC	MLOC_56864.1	1358	2e-24	852 - 911	100	60 / 60	minus	ABC12636 ABC28988
JLOC1	JLOC1_36807.1	1289	8e-25	491 - 550	100	60 / 60	plus
Harvest35	U35_32107	497	3e-25	386 - 445	100	60 / 60	plus

Contig Sequence (497 bp)

>U35_32107 497 Hv_44K_v2
CAACCCCAAGCACCCAACCGCGCCTCCTCTTCTCTTCCTCCTCCGCCGCCGCCGCCGCGC
GAATCTTGAGGGTTCGTGGCATGGCGGACACCCTCGACATGTCGCTCGACGACATCATCA
CCAAGAACAAGCCCCACCACCGCCGTGGCCGCCACAACCCAGCGTCCGCCGCCTCGGGTG
GATCCGCGCGCCCACGCCGCCGCTTCCGCAGCCGCGCCGCCACCCGCGCCGTCGCCGCGC
CCTACCACCAACTCAGCCTCCAGCAACAGGTGCCGCCAGCTTTTGGGTATGTTGCCCAGT
CGATGGCCATGGTAACGGCGCCGTCTGCCTTGGACTCGCCCACCAAGCTCTACATCTCCA
ACCTCGACTACAACGTCTCCAACGAGGATATCAAGGAACTGTTTTCTGAGATGGGTGATA
TCCAGCGCTACTCCATTAACTATGANCAGAGTGGAAGATCAAAGGGACTGCAGAGGTGTG
TTTTCGCAGATCGTCTG

Homology of Contig U35_32107 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None