barSeed - Barley Seed Development Database

Probe CUST_3898_PI390587928

Source Contig U35_108

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3898_PI390587928	Hv_44K_v2	CGTTGGCACCTGACAGTTTTCGAGAGAATAACATGTATGAATGTACATTTATGTTTGTAA	868	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.092	0.732	1.679	1.357	1.987
Raw	22.771	615.546	4258.490	15870.317	4147.913	6650.880

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55015.1	1870	2e-24	26 - 85	100	60 / 60	minus	ABC01244 ABC01246 ABC01247 ABC01249
JLOC1	JLOC1_35458.2	1897	8e-25	1803 - 1862	100	60 / 60	plus
JLOC1	JLOC1_35458.1	1029	8e-25	935 - 994	100	60 / 60	plus
Harvest21	ABC01246	966	3e-25	869 - 928	100	60 / 60	plus	ABC01246
Harvest35	U35_108	966	3e-25	869 - 928	100	60 / 60	plus

Contig Sequence (966 bp)

>U35_108 966 Hv_44K_v2
CGCGTCTCCGCCTGCGTACGGAGGAGGGTACCGCACCCCGCCGGCCGGCGCGGAGGCCTA
CCCGCCGCCGCCGCATGCCCACGGCGCTGAGGCGTACGCGCCGCCGGGCGCAGGGTACGG
GTACGGCAACCTGCACCGCGCGCTGGCGTCTGAGTCCACCGTGCGCGTCCTGTGCAGCGC
CGGCGAGGACTACAGCCTCACCGTGAGGAACGGCACCGTGTGCCTCGCGCCCACCAACCC
CAGGGACGAGTTCCAGCACTGGGTGAAGGACATGAGGTACAGCACCAAGATCAAGGACGA
GGAGGGCTACCCTGCGTTCGCCCTGGTGAACAAGATCACCGGCGAAGCCATCAAGCACTC
CCTCGGGCAGAGCCACCCTGTGAAGCTTGTGGGTTACAACCCGGAGTACATGGACGAGTC
GGTGCTGTGGACGGAGAGCAGGGACGTGGGCAAGGGGTTCCGCTGCATCCGCATGGTGAA
CAACATCTACCTCAACTTCGACGCGCTCCACGGCGACAAGGACCACGGCGGCGTCCACGA
CGGCACCGAGGTCGTGCTCTGGGAGTGGTGCAAGGGCGACAACCAGCGCTGGAAGATCGT
CCCGTGGTAGACTGTACCTTGATGTCATCCGCTTCATGTCGTGTCCGTTCTGCACTTCTG
CGCGTTCAGTAGAGAGAATAAACCTAGGCTGCAGCGATGATCTCTTCTTACTTGATCGAG
ACCGGATCGCTTCTTTGTCTGAGAACAAGTTCAGGATGTCGATCAGGTGCAGGGCGGTCT
AGCTAGCTATCTTCTGAGTTTGGTGTGGATCGCTACGTTGATCCATGCGAATGTGTCTCC
TCCTGTCTGTCAAGGAGAGAGTTTAGTTCGTTGGCACCTGACAGTTTTCGAGAGAATAAC
ATGTATGAATGTACATTTATGTTTGTAATGAACAAATATATGCCTGCATAAAAAAAAAAA
AAAAAA

Homology of Contig U35_108 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48460.1	401	2e-87	protein\|stress responsive protein, putative, expressed
Brachypodium v1_2	Bradi1g17470.1	433	6e-90
Arabidopsis v10	AT2G39050.1	317	2e-56	hydroxyproline-rich glycoprotein family protein \| chr2:16303427-16305336 FORWARD LENGTH=317