barSeed - Barley Seed Development Database

Probe CUST_38963_PI390587928

Source Contig U35_24332

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38963_PI390587928	Hv_44K_v2	GCCAGCTGCATACTGGATGAGCTAGAAATTAGTCGAAGTGCCTTTCAATTGCTCTTAGTT	480	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57476.2	1845	2e-24	130 - 189	100	60 / 60	minus	ABC16346 ABC20364 ABC34577
MLOC	MLOC_57476.1	1651	2e-24	164 - 223	100	60 / 60	minus	ABC16346 ABC20364 ABC34577
MLOC	MLOC_57476.3	1632	2e-24	17 - 76	100	60 / 60	minus	ABC16346 ABC20364 ABC34577
JLOC1	JLOC1_37258.3	1788	8e-25	1460 - 1519	100	60 / 60	plus
JLOC1	JLOC1_37258.2	2037	8e-25	1709 - 1768	100	60 / 60	plus
JLOC1	JLOC1_37258.1	1813	8e-25	1485 - 1544	100	60 / 60	plus
Harvest21	ABC20364	738	3e-25	199 - 258	100	60 / 60	minus	ABC20364
Harvest35	U35_24332	738	3e-25	481 - 540	100	60 / 60	plus

Contig Sequence (738 bp)

>U35_24332 738 Hv_44K_v2
AGTGTTCCTCAGCAGCCAGCCACGTCAGCACATCATGCAGAAGAACCAAGGGCCGCTGCT
GCTGCACCATCACCAGTTCCACAAAATGTCTCAAACCATACAAGAATATGGTCAGAGCTT
TCAGGTGTTACTCCCAAAAGCTTTGAAGCTAACGCAGAAAATTGTGCCCAGAAGGAGAGA
AATGGAATAGCTAACGTACTGAATGACACATCAGTGCTTCCCAATACCAATGCTCCCTGC
AAGCTACCAGTGACAGATAACGCAAACCATATGGAGCAGCCTGTGCAAATGGATCACTTT
GAAGAACCTCCTGAAGTTGTGGTTGATAACCCTCGTTCGCAGCATCACCCAAGCAACTGG
GTAGGTGCTGACGAAGACAATGATGATGAAGAAGATGAGGAGCTTTTTGTCCAAACAACA
CCTCACTACATGGACTAAGGAAGGACCGATGCCGATTCTGAATTTTGCAGGTACATTCCA
GCCAGCTGCATACTGGATGAGCTAGAAATTAGTCGAAGTGCCTTTCAATTGCTCTTAGTT
CGTGTAGGCCTGAAGCTAACAATACAAGAACATTGTTTCCCAGCACCTAATTTGTATTCA
GGTGTGGCTATTTCATTGTTGCATAATATAGAGAACATTAATGCGACTTGTTTACATTGC
ATATATGGCCTTCGCTATTTTTTTTCTTTGCAAGAGAAAGAACTTGTATTTGCATCAATA
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_24332 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g62700.1	443	6e-51
Arabidopsis v10	None