barSeed - Barley Seed Development Database

Probe CUST_38918_PI390587928

Source Contig U35_50616

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38918_PI390587928	Hv_44K_v2	TACATGTAACCTATCTGCAGCAAATGCTCATGTTTGTTTTTGCTGACCTACAGAATCATG	241	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60298.1	1831	2e-24	235 - 294	100	60 / 60	minus	ABC04150
JLOC1	JLOC1_39307.3	1682	8e-25	1389 - 1448	100	60 / 60	plus
Harvest21	ABC52862	488	3e-25	242 - 301	100	60 / 60	plus
Harvest35	U35_50616	488	3e-25	242 - 301	100	60 / 60	plus

Contig Sequence (488 bp)

>U35_50616 488 Hv_44K_v2
AAAAAAGAAAAGAAAAGACAACCATGATCGATTGAATAAGTAAAATAACAGAATGTCCAA
ATTTTCCTAAGAACATCTGTCATAGAATAGCATAAGCAACGACAAATGTTTGCAACTCAA
GTAAGGCATAGAGATATGATTTTGTAGGTAGAGATATAATCCACTGATAAGTTGTATGGT
AGCGTATGCAGCTCTCAGATAGCACTATACTGCTATGATCTGTGCATGGAACTACTAGAG
GTACATGTAACCTATCTGCAGCAAATGCTCATGTTTGTTTTTGCTGACCTACAGAATCAT
GAGCGGAACAGGGTACACTGTGGAAGTCACTAACCTGTCAAGCAGCGCGTCTGAAAATGA
TCTTCATGAGTTCTTCTCATTCTCTGGACCTATTGAGCATATAGACCTTATCAGATCAGG
AGGATATGGTTCAACTGCTTATGTGACTTTCAAGGAACCCTATGCCTTGGAAACTGCAGT
ATTGTTGA

Homology of Contig U35_50616 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None