barSeed - Barley Seed Development Database

Probe CUST_38861_PI390587928

Source Contig U35_48318

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38861_PI390587928	Hv_44K_v2	GCTGCTGGTGTGTGTGTTAACAATTCAAAAACATCACTTCAAAGTTGTATTAGTCAGAAA	40	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59859.1	2378	2e-24	1872 - 1931	100	60 / 60	plus	ABC26079 ABC26631 ABC35374 ABC49958
Harvest21	ABC49958	715	3e-25	41 - 100	100	60 / 60	minus	ABC49958
Harvest35	U35_48318	715	3e-25	41 - 100	100	60 / 60	minus

Contig Sequence (715 bp)

>U35_48318 715 Hv_44K_v2
AGGCTATAATTCGTCGTGCGATGTATATATACCAATTATTTTTCTGACTAATACAACTTT
GAAGTGATGTTTTTGAATTGTTAACACACACACCAGCAGCAGCGGAAAATCCGCACTTAG
GAGGTATGCTACTATATACGAGTACTTTTTTAGGTAGTCCACAGCGACTGCTTTGCAGTG
CATAAGAGATAAGGGGTTGTTACAAAACCTTAGGCTATAACAAGGTTACACGCTACACAG
GGCAGACTGTAATAATGTAGATGCACTGTTTCCAATAGTATGAATCCTAAGCTAAAGAAG
CTTACTACGGCCTGATACACCTTCAGCTTCACTGCTTACTCCTTGCTAGACTCCGGTTGA
TACACATTGCTTCATTAGATTCTTTCTGTTTATCAGTTTCTGGTTTCTGATTGCACCAAT
CAGCATATCTTGGCATCCAAATGCATGTACATTCTTCAAGTTTGGGCACTGAAGTAGCAG
CCGCTCTGCGTGTAGATTTGTACAGGAGTTGAGGTTCAGATCAATCAACTCTGGGCATTT
CACATACAAAGCATCTATTGCTGAACAGCCCCATAGACTAAGCTTCTTCAAATTATCATG
CTTTATGATTAGCTTTTGGCGCATAGGTTGCTTTTTTAAGGTGGGTAATTTTGGGCACAA
TCTAATCCTTCCATTAATCTCACCAAAATAAGCCCCCTGTTTTTCATTCTGCGAG

Homology of Contig U35_48318 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g43390.4	556	2e-57	protein\|F-box/LRR domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g14250.1	576	6e-66
Arabidopsis v10	None