barSeed - Barley Seed Development Database

Probe CUST_38828_PI390587928

Source Contig U35_2461

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38828_PI390587928	Hv_44K_v2	ATACGTATGAGTAGTTATTACTAATTGGGCGAATAGCTCCTGTGCGACGTTTTTGAGGTG	1482	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64122.1	1727	3e-22	1657 - 1715	98	59 / 60	plus	ABC06082 ABC06083 ABC06085
JLOC1	JLOC1_42061.4	1502	1e-22	1372 - 1430	98	59 / 60	plus
JLOC1	JLOC1_42061.3	1508	1e-22	1378 - 1436	98	59 / 60	plus
JLOC1	JLOC1_42061.2	1461	1e-22	1331 - 1389	98	59 / 60	plus
JLOC1	JLOC1_42061.1	1722	1e-22	1592 - 1650	98	59 / 60	plus
Harvest35	U35_2461	1563	3e-25	1483 - 1542	100	60 / 60	plus

Contig Sequence (1563 bp)

>U35_2461 1563 Hv_44K_v2
GGCGAGCCCAGGCCAGCAGAACCCAACAAGGTCAGCGACACCGGCGACGCGCCAATAACC
CACTCTCGGCCAAGGAAGCCAACCACAAGATCGACCCTCTCCAATGGCGTTGGCGTGCTC
CCCCGAACCCCCGCTCATGGCAAGCGCGTGACCGATCGATCCCGCGCAACCTCCATTCCA
CGGCGTTGGCGCGGTGTTGCCTCCCCACCTCCCTCACCCTGTCCCTCTCGTGTTGTTTAT
TCTTGCGCCCCGACACGGCAGGACGAGGAGGGGACGGATAGGAAAGCGCAGCCCAACTCC
CAACGGTTTCTCCTCCCGGCCAGTTCGTGGGCGATCCCCGGAGCCTGAGTCGTCGCCGGC
CCGGTTCGTCTTCGGTCTTCTCCCGGGGCTTCTTCTCCTCCAGGTCGAGCCTCAATAAGT
TGAAGACAACATGTTTCGTAGGAAGCACGCCTCTCATTTCAATTCAGATGATTCTGAACA
ACGGCAAGCAAAGATCAACGAACAGAGAGCTGCACTTGGGCCTATGTCTCCACGTGGCGA
GAAGTACTGCAGTGAAGCATGCTTGGCTAGGTATCTTGAAGCCCGCAACTGGAATGTCGA
CAAGTCTAGGAAAATGTTGGAAGAAAGTTTAAAGTGGAGGGCACTTAGCAGGCCTGAGGA
TATTCGCTGGCCTGATGTTTCTGTGGAGGCAGAAACAGGTAAAATGTACAGGGCAACTTT
CACAGATAGAGAGGGGAGAGCCGTCGTTATTATGAGACCTGCAAAGCAGAATACGTCATC
TCATGAAGGGCAGTTGCGATATCTTATATATACCCTGGAGAATGCAGTTCTCAGCCTGCC
TCAGGGTCTAGACAAAATGGTGTGGTTGATAGACTTCACAGGATGGACACTGGCCAATGC
AACCCCCATAAAGACTGCCAGAGACAGTGCGAATATCCTGCAAAACCATTACCCCGAGAG
GCTCTCGGTTGCGTTTTTGTTCAATCCCCCCAAAGTATTTGAGGCTTTCTTTAAGGTTAT
CAAAGTATTCCTCGACCCGAAATCGATCCAGAAAGTCAACTTCGTGTACAAGGACAACGA
GGAAAGTATGAAGACAATGTACAGGCACATTGATCCAGAGGTCCTTCCGGTGGAGTTTGG
AGGGAAGAACATTGTGGTGTACAACCACGAGGATTACTCTAAGTTGATGACAAAGGATGA
CATCAAAACAGCAAGCTTTTGGGCAGCAGATGTTAACCATGTCGTGAACGGGGGTTCGGT
GCCTCATGTTATACCGGAGTCGTCATCAATTGTTGCTAAAGCAAGTTGAGGAACATCGGC
GAGCCATCTCGCATGTTGAGGGGCTTCAGCAAGCCAATGTGGCGCGGTTCTTGGTACAGC
TCTGATAGAGGAATACAGCGATACGTTGAGGATGTTTGGATAAATAAATGTAACTGCAGA
ATATCTCGCATGTGATGTTACAAAAATAGTACTGCAGAATCTATACGTATGAGTAGTTAT
TACTAATTGGGCGAATAGCTCCTGTGCGACGTTTTTGAGGTGAAATAAAAAAAAAAAAAA
AAA

Homology of Contig U35_2461 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g51430.2	300	3e-163	protein\|SEC14 cytosolic factor family protein, putative, expressed
Brachypodium v1_2	Bradi1g10270.1	293	0.0
Arabidopsis v10	AT1G75170.1	296	8e-108	Sec14p-like phosphatidylinositol transfer family protein \| chr1:28214405-28215686 FORWARD LENGTH=296