barSeed - Barley Seed Development Database

Probe CUST_38827_PI390587928

Source Contig U35_2462

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38827_PI390587928	Hv_44K_v2	CTACAAAATACCTTGCTTGTGAATTTCTGTATTACAAACAACAGTTAATTTGGCCATCGC	679	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250907.1	1433	3e-21	1356 - 1415	97	59 / 61	plus	ABC06082 ABC06083 ABC06085
JLOC1	JLOC1_44577.2	1247	2e-21	1091 - 1150	97	59 / 61	plus
JLOC1	JLOC1_44577.1	1153	2e-21	997 - 1056	97	59 / 61	plus
Harvest21	ABC06085	739	3e-25	1 - 60	100	60 / 60	minus	ABC06085
Harvest35	U35_2462	739	3e-25	680 - 739	100	60 / 60	plus

Contig Sequence (739 bp)

>U35_2462 739 Hv_44K_v2
TTGTAATGAGAACCTGCAAAGCAGAATACATCATCTCATGAAGGGCAGTTGCAGTATCTT
ACATATACCTTGGAGAATGCAGTCCTCAACCTGCCTCAAGGTCAAGACAAAATGGTGTGG
CTGATAGACTTCACAGGATGGACACTGGCCCATCGAAGTCCCTTCAAGACTTCCAGAGAG
AGTATGAACACCGTGCAAAACCATTACCCGGAGAGGCTTGCGGTTGCATTTATGTTCAAT
CCGCCCAAAGTATTTGAGGCTTCTTTTAAGGTTCTCAAAGTACTGATTGACCCGAAATCA
GCCCAGAAACTGAACTTTGTGTACAAGGAGAACGAAGAGAGCATGAAGACAATGTACAGC
CACATTGATCCAGAAGTTCTTCCTGTTGAGTTTGGAGGGAAGAACAATGTACTGTACAAC
CATGAGGATTACTCTAAGTTGATGACCAAAGATGACATCAAAACATCAAGCTTTTGGGGG
GCAGATGGTAACAATGCCATGAACAGGCACTCGGTTCCTGAGGTTAAATCGCAGTCATCA
CAAATTGTTGCGAAAGAAAGTTGAGAAACATTGGTCAGCCATCTCACCTGTTGTTGCTAA
AGCAAGTTGTGATGCGTAACCGTTATGAGTTTGCAATTGCCTTGGGTACAGCTGTATAAA
AAGAAATAAACAAATGTAACTACAAAATACCTTGCTTGTGAATTTCTGTATTACAAACAA
CAGTTAATTTGGCCATCGC

Homology of Contig U35_2462 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g51430.2	300	2e-89	protein\|SEC14 cytosolic factor family protein, putative, expressed
Brachypodium v1_2	Bradi1g10270.1	293	3e-102
Arabidopsis v10	AT1G75170.1	296	1e-59	Sec14p-like phosphatidylinositol transfer family protein \| chr1:28214405-28215686 FORWARD LENGTH=296