- Probe CUST_3876_PI390587928
- Source Contig U35_114
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3876_PI390587928 | Hv_44K_v2 | GTCAAAACGAGGAAACACTAGTTAACACCAATCCACTATGAAGACCTTCCTCATCTTTGC | 0 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.103 | 0.086 | 0.168 | 2.686 | 9.222 | 12.870 |
| Raw | 3.143 | 3.026 | 11.788 | 251.236 | 344.528 | 531.588 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_15771.1 | 1131 | 6e-21 | 1065 - 1123 | 97 | 57 / 59 | minus | |
| Harvest21 | ABC00258 | 597 | 2e-22 | 1 - 58 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC00296 | 861 | 6e-22 | 1 - 60 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC43505 | 429 | 2e-21 | 2 - 60 | 97 | 57 / 59 | plus | |
| Harvest21 | ABC32372 | 457 | 2e-21 | 3 - 61 | 97 | 57 / 59 | plus | |
| Harvest21 | ABC00822 | 1417 | 2e-21 | 389 - 447 | 97 | 57 / 59 | plus | ABC00822 |
| Harvest21 | ABC00818 | 1411 | 2e-21 | 264 - 322 | 97 | 57 / 59 | plus | |
| Harvest21 | ABC00548 | 638 | 2e-21 | 2 - 60 | 97 | 57 / 59 | plus | |
| Harvest21 | ABC00524 | 874 | 2e-21 | 42 - 100 | 97 | 57 / 59 | plus | ABC00524 |
| Harvest21 | ABC00523 | 1235 | 2e-21 | 2 - 60 | 97 | 57 / 59 | plus | ABC00523 |
| Harvest21 | ABC00243 | 589 | 2e-21 | 3 - 61 | 97 | 57 / 59 | plus | |
| Harvest21 | ABC00241 | 1119 | 2e-21 | 3 - 61 | 97 | 57 / 59 | plus | ABC00241 |
| Harvest21 | ABC00232 | 1132 | 2e-21 | 13 - 72 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC33059 | 343 | 8e-21 | 5 - 62 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC00285 | 1008 | 8e-21 | 1 - 58 | 97 | 56 / 58 | plus | |
| Harvest21 | ABC00240 | 798 | 8e-21 | 2 - 59 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_114 | 974 | 3e-25 | 1 - 60 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_87 | 602 | 2e-22 | 1 - 58 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_339 | 1379 | 2e-21 | 264 - 322 | 97 | 57 / 59 | plus | |
| Harvest35 | U35_213 | 638 | 2e-21 | 2 - 60 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_200 | 533 | 2e-21 | 2 - 60 | 97 | 57 / 59 | plus | |
| Harvest35 | U35_81 | 589 | 2e-21 | 3 - 61 | 97 | 57 / 59 | plus | |
| Harvest35 | U35_75 | 1141 | 2e-21 | 11 - 69 | 97 | 57 / 59 | plus | |
| Harvest35 | U35_38169 | 608 | 8e-21 | 1 - 58 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_342 | 1417 | 8e-21 | 390 - 447 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_78 | 488 | 8e-21 | 2 - 59 | 97 | 56 / 58 | plus |
Contig Sequence (974 bp)
>U35_114 974 Hv_44K_v2 GTCAAAACGAGGAAACACTAGTTAACACCAATCCACTATGAAGACCTTCCTCATCTTTGC ACTCCTCGCCATTGCGGCAACAAGTACGATTGCACAACAACCACAACCATATCCACAACA ACCCTTCCCACCGCAACAAGCATTTCCACAACAACCACCATTTTGGCCACAACAACCATT TCCACAGCAACCACCATTTGGGCTACAACAACCAATTCTATCGCAACAACAACCATGTAC ACCACAACAAACACCACTCCCACAAGGACAACTGTACCAAACGCTTCTGCAACTACAAAT ACCCTATGTTCAACCATCTATTTTGCAACAGCTAAACCCATGCAAGGTATTCCTCCAGCA GCAGTGCAGCCCCGTGCGAATGCCACAACTTATTGCTAGGTCGCAAATGTTGCAGCAGAG CAGTTGCCATGTGTTGCAGCAACAATGTTGCCAGCAACTGCCGCAAATCCCCGAACAATT CCGCCATGAGGCAATCCGTGCAATCGTCTACTCTATCTTTCTGCAAGAACAACCCCAACA GTCGGTCCAAGGTGTCTCCCAACCCCAACAACAGTTGCAGCAGGAGCAAGTCGGACAATG TTATTTCCAACAACCTCAACCACAACAACTTGGTCAACCACAACAGGTACCACAGAGTGT TTTCTTGCAGCCACACCAGATAGCTCAGCTTGAGGCGACGACTTCCATTGCGCTGCGTAC CCTACCAACGATGTGCAATGTTAATGTGCCATTGTATGACATCATGCCATTCGGCGTTGG CACTAGAGTTGGTGTCTAATGATAAGAAAAGGTCTCTAGAGATATATAGTTGGATCACCG TTGTTTAGTCGATGTAGCGGTGACAAATAAAGTGTCACACAACCTTATGTGTGACCAGCC GAAACTAGTTGTTTAAATTTTGAAATAAAATATAAATAAAGTTCATGAAAAAAAAAAAAA AAAAAAAAAAAAAA
Homology of Contig U35_114 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |