barSeed - Barley Seed Development Database

Probe CUST_38745_PI390587928

Source Contig U35_13443

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38745_PI390587928	Hv_44K_v2	TTATTAGCCATTGATCACCAGCAAAGCTAGTTGGACCAAAGGAAGGATGGCAGAGTCCTT	18	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51141.4	1562	2e-24	10 - 69	100	60 / 60	plus	ABC18762
MLOC	MLOC_51141.3	7988	2e-24	2220 - 2279	100	60 / 60	minus	ABC08959 ABC18762 ABC47652
MLOC	MLOC_51141.1	4049	2e-24	3895 - 3954	100	60 / 60	minus	ABC18762
MLOC	MLOC_51141.2	4450	2e-24	3929 - 3988	100	60 / 60	minus	ABC18762
JLOC1	JLOC1_32643.1	4516	8e-25	119 - 178	100	60 / 60	plus
JLOC1	JLOC1_32642.2	3830	8e-25	3744 - 3803	100	60 / 60	minus
JLOC1	JLOC1_32642.1	4434	8e-25	4348 - 4407	100	60 / 60	minus
Harvest21	ABC23512	752	3e-25	19 - 78	100	60 / 60	plus
Harvest35	U35_13443	752	3e-25	19 - 78	100	60 / 60	plus

Contig Sequence (752 bp)

>U35_13443 752 Hv_44K_v2
GTCAGCTTTCAGATGCTCTTATTAGCCATTGATCACCAGCAAAGCTAGTTGGACCAAAGG
AAGGATGGCAGAGTCCTTGGACAAGATGAAGGTGGAGTTCACGGGCCATGAAGAGAGCGT
GCAGGCCCTCGCAGAGGCCTTCCATGACTCCGGCGAGGTCCCCGAGAGGTACATCAGGCC
GGAGATCGACGCAGAACCTGTCACCGCCGATGCCGGGGCCCATGCTCTGCCGACGATCGA
CATGTTCAGGCTGCTCGACCCCGAGTTCTCGGCAGAGGAGTCCGCTAAGCTCGGATCCGC
CTGCGAGCACTGGGGGTTCTTCCAGCTCGTCAACCATGGCGTGGACGTGGGGCTGCTGCG
GCAGACGAAGGCCGACATCGCCGACTTCTTCGGCCTTCCCCTGGAGGAGAAATCGGCCGT
GGCGATACCGCCCAACGGCATGCAGGGCTTCGGCCACCACTTCGTCTTCTCCAAGGAGCA
GAAGCTGGACTGGGTGGACCTGCTGTTCCTCGCCACCAGGCCCGCCCAGGAGCGGAGCCT
GGACTTCTGGCCTACCAAGCCCTCCACCTTCAGGGACACACTTGATAAGTACACGACGGA
GCTAGCAAGCGTAGCCGAACAACTGTTCAGGTTCATGGCCAAGGACCTGGGAGTTGATCA
GGAGGCGCTCCTTGGCACCTTCAAGGGGCTGCGCCAGTGCGTGAGGATCAACTACTACCC
TCCCTGCCGTCAGGCCGGCAAGGTGCTGGGCC

Homology of Contig U35_13443 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g41020.1	361	8e-107	protein\|flavonol synthase/flavanone 3-hydroxylase, putative, expressed
Brachypodium v1_2	Bradi3g33230.1	355	9e-130
Arabidopsis v10	None