barSeed - Barley Seed Development Database

Probe CUST_38641_PI390587928

Source Contig U35_30306

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38641_PI390587928	Hv_44K_v2	TGTCAGAGCCCCTTCTTGCTGTCTTTGGTGGCGTGCATGAGGTGAGAAACAGACCCAACG	364	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354054	964	2e-24	380 - 439	100	60 / 60	plus	ABC09024 ABC17054
Harvest21	ABC30163	438	3e-25	365 - 424	100	60 / 60	plus
Harvest35	U35_30306	438	3e-25	365 - 424	100	60 / 60	plus

Contig Sequence (438 bp)

>U35_30306 438 Hv_44K_v2
CAACCCCCTCGCAAAACCATAGAGTAGCTAGGCAACAGGGAGAGTTCGTATCCCTTGACG
ACGGCAGAGGCATTCGCTGTCATCCCTTAGTCAGCCACGGCCATCCCAGAGCCTCCCCTT
CCTCCTAGCGTCGCCGTTAGTCTCCTGGAGCGTCGTAGAACCCATCCCCGCACCCAATTT
AGCTGGGGAGCCAACGGGGACGAAGTCCCTCTTCCTCCCGACACCGTCGTCCGCCATGAC
CAAGGCCTTTCTCAGCCCTGAGCTTCCCTGTGATCCTCCCCAACCCCATGGGATGCAGTC
CATCCCCCTGAGCACGTCGGTGTGTCGAGCGATGAGGATGATGCACCCCAGCACTGGCAA
TCACTGTCAGAGCCCCTTCTTGCTGTCTTTGGTGGCGTGCATGAGGTGAGAAACAGACCC
AACGGGTGGGTCCCACCT

Homology of Contig U35_30306 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None