barSeed - Barley Seed Development Database

Probe CUST_38625_PI390587928

Source Contig U35_176

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38625_PI390587928	Hv_44K_v2	GAGAGAGAGAGAGACATGTGATCGATCGGTTATGTATGTATGAACAAACCATAATAAATT	1125	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14727.1	1444	2e-24	15 - 74	100	60 / 60	minus	ABC02957 ABC02958 ABC33947
JLOC1	JLOC1_10058.1	1637	8e-25	1394 - 1453	100	60 / 60	plus
Harvest21	ABC02959	1472	3e-25	1377 - 1436	100	60 / 60	plus
Harvest21	ABC02954	773	3e-25	33 - 92	100	60 / 60	minus
Harvest21	ABC02955	410	6e-22	24 - 83	97	58 / 60	minus
Harvest35	U35_176	1218	3e-25	1126 - 1185	100	60 / 60	plus

Contig Sequence (1218 bp)

>U35_176 1218 Hv_44K_v2
CAGCAGCACTGCACTCCACTGGTGCGGTACAGAGGAGGCAAGCAGAGGAGCAACGTGCGA
GTTGCCGGCATGGCGAGGCCGTCCTTCTCCCTCCACCTGTGCCTGGCCGTTCTGGCCTTG
GCCGCCGCCGCGTCGGAGGCCGGGTTCTACGACCAGTTCGACGTGGTCGGCTCCGGCAAC
AACGTCCGCGTGAACGACGACGGCATCGCCCAGCAGGTGGCGCTCACGCTCGACCAGGGC
AACGGCGGCTCCGGCTTCAGCTCCAAGGACAAGTACCTCTACGGCGAGTTCAGCGTCCAG
ATGAAGCTCATCGGCGGCAACTCCGCCGGCACCGTCACCTCCTTCTACCTGACGTCTGGG
GAGGGCGACGGCCATGACGAGATCGACATCGAGTTCATGGGCAACCTCAGCGGCGACCCC
TACGTGATGAACACCAACGTCTGGGCCAGCGGCGACGGCAAGAAGGAGCACCAGTTCTAC
CTCTGGTTCGACCCCACCGCCGACTTCCACACCTACAAGATCGTCTGGAACCCCAAGAAC
ATCATATTCCAGGTGGACGACGTGCCGGTGAGGACGTTCAAGAAGTACGACGACCTGCCG
TACCCGAGCAGCCAGCCGATGACGGTGCACGCCACGCTCTGGGACGGCAGCTACTGGGCC
ACCCGCCACGGCGACGTCAAGATCGACTGGACCCAGGCGCCCTTCGTCGTCAACTACCGC
GGCTACACCTCCAACGGCTGCGTCAGCAACGGCGGCTCCTCCGCGTGCCCCGCCGGCAGC
GACGCCTGGATGAGCACGGAGCTCGACGCCAAAGCCCTCGGCACCGTCGCCTGGGCCGAG
AGCAAGTACATGTCCTACGACTACTGCACCGACGGCTGGCGCTTCCCCAACGGCTTCCCC
GCCGAGTGCTCCCGCCGCAACTGATCCATCATCACTTTCTTCTTCCTTCCTTCCCTCCTC
GTCGTTGGTGTTCTTGTTTGTCCATTCGATTGGAGCGAGACGGACACACGTTGGCTCATT
TCCCATGTAAGTACATTTTACCATGGATTTGATTGTTACAGTGAGTGTTACAGTTACAGA
GAAAGTTAAGGTGACTTCTTGTGGGTTTCTCTGCTTGGAGAGACAGAGAGAGAGAGAGAC
ATGTGATCGATCGGTTATGTATGTATGAACAAACCATAATAAATTATAAATAATCCTTGC
AAAAAAAAAAAAAAAAAA

Homology of Contig U35_176 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g13920.1	291	1e-156	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi3g18590.1	281	9e-174
Arabidopsis v10	AT5G57550.1	284	7e-93	\| Symbols: XTR3, XTH25 \| xyloglucan endotransglucosylase/hydrolase 25 \| chr5:23305055-23306384 REVERSE LENGTH=284