barSeed - Barley Seed Development Database

Probe CUST_38624_PI390587928

Source Contig U35_177

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38624_PI390587928	Hv_44K_v2	CAGTTCGAGTAATCGTGCTCAGCCTCAATTCTCGTATGTAATATATTGCCCTCTAAAAAA	510	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.942	6.191	1.951	0.631	0.471	0.419
Raw	74.330	160.717	38.472	22.074	3.445	3.304

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357837	1341	3e-21	1184 - 1237	100	54 / 54	plus	ABC02669 ABC02670 ABC02671 ABC02672 ABC02673 ABC40934
MLOC	MLOC_40806.2	765	3e-21	627 - 680	100	54 / 54	plus	ABC02669 ABC02670 ABC02673 ABC40934
MLOC	MLOC_40806.1	799	3e-21	692 - 745	100	54 / 54	plus	ABC02669 ABC02670 ABC02673 ABC40934
JLOC1	JLOC1_26649.1	870	2e-21	693 - 746	100	54 / 54	plus
Harvest21	ABC02669	1313	6e-22	1171 - 1224	100	54 / 54	plus	ABC02669
Harvest35	U35_177	581	3e-25	511 - 570	100	60 / 60	plus
Harvest35	U35_398	1362	6e-22	1187 - 1240	100	54 / 54	plus

Contig Sequence (581 bp)

>U35_177 581 Hv_44K_v2
CAGAACCTTTCTCCCCATCTTCATCTTCTAGTACTTGTTCCTAGCTAGCTCTAGTTGAGT
GGGCATACATTTGGGAGCATCGAGCACGAAACGCATGGCTCGCATGGGGGCGTCGGTGCT
GGTGATCCTGCTCGCCTCTTGTGCCCTGGCGGCGGCGAGCTTCGACAAGGAGTTCGACGT
TACCTGGGGTGACGGGCGCGGCAAGATCCTCAACAATGGCCAGCTGCTGATGCTGGGGCT
GGACAAGGTCTCCGGCTCCGGGTTCCAGTCCAAGCGCGAGTACCTCTTCGGCAAGATCGA
CATGCAGCTCAAGCTCGTCCCCGGCAACTCCGCCGGCACCGTCACCGACAGTTGCTGGCA
TTGGACCGCGTATCCGTTGATCGCCGGAGGAAGACGGCTTGAGATAGGAAAGATGGGGTG
TTTGTATAGACCGAAATCAATAATAAGGATTAGTGATGGGAAATGTTGTAAAGTAGCCGG
TGGTAGATTCTTCTGTTCGTCATTTACGCCCAGTTCGAGTAATCGTGCTCAGCCTCAATT
CTCGTATGTAATATATTGCCCTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_177 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None