barSeed - Barley Seed Development Database

Probe CUST_38597_PI390587928

Source Contig U35_185

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38597_PI390587928	Hv_44K_v2	TCCATCACGACGCTCCTCTCCGACGGCGTCCCGCTCCGGCAGCCCTTCGCCGGGAACCCC	504	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354089	1136	2e-24	527 - 586	100	60 / 60	plus	ABC04632 ABC04633 ABC05965 ABC33941
MLOC	MLOC_26558.1	1722	2e-24	1122 - 1181	100	60 / 60	minus	ABC04632 ABC04633 ABC38188
JLOC1	JLOC1_18036.1	1771	8e-25	1174 - 1233	100	60 / 60	minus
Harvest21	ABC04634	1191	3e-25	505 - 564	100	60 / 60	plus
Harvest21	ABC04632	1283	3e-25	515 - 574	100	60 / 60	plus	ABC04632
Harvest35	U35_467	1320	3e-25	549 - 608	100	60 / 60	plus
Harvest35	U35_185	564	3e-25	505 - 564	100	60 / 60	plus

Contig Sequence (564 bp)

>U35_185 564 Hv_44K_v2
AGACACAATCCGAAAATGGGGCAGTCCAAGCCAGCTCTGGTGCTTCTCCTGCTCGCCGTC
TCCACGGCGGCGACCGTCGGCAAGCCGCTGCTCACGAAGATCACCAAGAGCGGCGCGTCC
ACTGCGCTCTACACCGCACCACTCAGCGCCGGCCGCCCTCTGGTCCTCGACCTCTCCGCG
CCGGCCATCACGACGCCGTGCAGCGGGCAGACGACGACCGTGACGCTCTCGGCCAACTCC
ACCGACGGCAGCAACCCGCTGTCCCCGGTCTCCTTCGCCGCCACCGCCACCTGCGCGGCG
GCCCCCTCCGGCGCCGTCGGCGTGGCGGGGCTCGCGCGCTCCAGCGCCTCGTTCCCGGCC
CAGGTGGCCAAAACACAGAAGGTGGCCAACTCGTTCGCGCTCTGCCTCCCGAGCGACGGC
AGGACCGGGTTCACCGGCAACGGCATGGGTGCGGCCATCTTCGGCGGCGGCCCGTTCTTC
CTCGCGCCCCCGGCGGACCGGCCGTCCATCACGACGCTCCTCTCCGACGGCGTCCCGCTC
CGGCAGCCCTTCGCCGGGAACCCC

Homology of Contig U35_185 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None