- Probe CUST_38573_PI390587928
- Source Contig U35_30327
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_38573_PI390587928 | Hv_44K_v2 | AGGAGTGGTACTTCTTTTGCCATAAAGACCGCAAGTACCCGACGGGGACGAGGACCAACC | 360 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_64057.1 | 1625 | 2e-24 | 449 - 508 | 100 | 60 / 60 | plus | ABC09757 ABC11098 |
MLOC | MLOC_64057.2 | 1651 | 2e-24 | 348 - 407 | 100 | 60 / 60 | plus | ABC09757 ABC11098 |
JLOC1 | JLOC1_42017.1 | 1765 | 8e-25 | 443 - 502 | 100 | 60 / 60 | plus | |
Harvest21 | ABC34716 | 669 | 3e-25 | 445 - 504 | 100 | 60 / 60 | plus | |
Harvest21 | ABC30196 | 495 | 3e-25 | 361 - 420 | 100 | 60 / 60 | plus | |
Harvest21 | ABC13225 | 657 | 3e-25 | 337 - 396 | 100 | 60 / 60 | plus | |
Harvest35 | U35_38789 | 669 | 3e-25 | 445 - 504 | 100 | 60 / 60 | plus | |
Harvest35 | U35_30327 | 495 | 3e-25 | 361 - 420 | 100 | 60 / 60 | plus | |
Harvest35 | U35_20522 | 657 | 3e-25 | 337 - 396 | 100 | 60 / 60 | plus |
Contig Sequence (495 bp)
>U35_30327 495 Hv_44K_v2 CCGCCTCTCCCTCTCTCTTTCACACACGCCTCTCTCTCTTTCTCTCGGCCTCCATTTCCT CTTCTTCTAGCTCTAGCTAGCTAGCTTGCTTCGGCGCCCGGCTTGGAGATGTCTGAGGTT TCGGTGATAAACCANGCGACNGAGGTGGAGGACGCGGCGGCGGGGCTGGACCTGCCGCCG GGGTTCCGGTTCCACCCCACGGACGAGGAGATCATCTCGCACTACCTCACCCCCAAGGCT CTCGACCACCGCTTCTGCTCCGGCGTCATCGGCGAGGTCGACCTCAACAAGTGCGAGCCA TGGCATCTCCCAGTTTGCGTGTTTCCACCGGCCGGACAGGCAAGGCCAAGATGGGCGAGA AGGAGTGGTACTTCTTTTGCCATAAAGACCGCAAGTACCCGACGGGGACGAGGACCAACC GCGCCACCATGAGCGGCTACTGGAAGGCCACCGGCAAGGACAAGGAGATCTTCCGGGGGA GGGGCATCCTCGTCG
Homology of Contig U35_30327 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os03g21030.1 | 359 | 5e-53 | protein|no apical meristem protein, putative, expressed |
Brachypodium v1_2 | Bradi1g63630.1 | 359 | 1e-57 | |
Arabidopsis v10 | None |