barSeed - Barley Seed Development Database

Probe CUST_38560_PI390587928

Source Contig U35_4916

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38560_PI390587928	Hv_44K_v2	TTCGCAATTAGTAGCTTATGTTTGGAGTTGTTATATCCTAGTCAACGGTTTCTATTATCC	1085	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.345	2.050	1.160	0.813	0.350	0.342
Raw	819.451	1119.727	548.317	589.015	93.618	98.595

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369953	1620	2e-24	1541 - 1600	100	60 / 60	plus	ABC10434
MLOC	MLOC_30854.1	658	2e-24	569 - 628	100	60 / 60	plus	ABC10434
JLOC1	JLOC1_20359.1	808	8e-25	570 - 629	100	60 / 60	plus
Harvest21	ABC10434	1184	3e-25	1086 - 1145	100	60 / 60	plus	ABC10434
Harvest35	U35_4916	1184	3e-25	1086 - 1145	100	60 / 60	plus

Contig Sequence (1184 bp)

>U35_4916 1184 Hv_44K_v2
GCGGCAGCGGCAGCGGCGGGGAGCTCGTGAAGAAGAAGAGGGGGCGGCCGAGGAAGTACG
GGCCGGACGGGACCCTCGGCTCGGCTGTGAAGGCCGAGGCGGGCGGGCAGTCTGGTGGCG
CGGGGTCCAACTCGAATCCTGACGGCAAGCGCAGAGGACGCCCCCCTGGATCTGGCAAAA
AGAAACAGCTCGATGCCTTAGGTTCAGCTGGGACATCATTTACTCCTCACATAATAACTG
TGAAGCCTAATGAGGATGTTGCCTCGAAAATAATGTCTTTTTCACAACAAGGCCCACGTA
CTACATGTATAATCTCAGCAAACGGTGCGCTGTGCACAGCAACACTCCGTCAACCAGCAA
CCTCTGGTGGCATAGTGACATATGAGGGCCACTTTGATATTCTCTCTCTGTCGGGCTCCT
TTCTGCTCGCAGAGGATGGTGACACTCGCAGCAGGACAGGTGGTTTGAGTGTTGCTCTGG
CTGGAAGCGATGGACGTGTTGTAGGAGGTTGTGTTGCTGGAATGCTTATGGCTGCAACGC
CTGTCCAGGTTGTGGTGGGCAGCTTCATCGCCGAAGGTAATAAAAAGCCAAAGGAAGAAC
AGCCGAAGCGCGAGCCAACATCTGTGCCGATGCCAACATCTATGCCGATGCAGACTGCTT
CTGGCTTTGGTGCAGCAGCCTCTGCTGCTGCAACTCCATCAGATGGAACATCGAGTGACC
ACTCTGACGACCCAGGGAGCCCTATAGGACCCAACGGCAGCGCATTCAACAACGCAGGCC
ATCCGACCCACGCTTCATATGCTCCGATTGGCTGGTCACTCTCCGGGAACCAAGGCCGCT
ACGACCCAGACATGAAGATGGTGACCGACTAATGGCTCTCAAATTTACAGCAGATTCATT
TTTAGTATTTGACATAGTAGAGTGTAGGGTTCCCTGCACCGGCGCCAGCGAGTCATTGTC
GGCCAATAATCCGGTGTGCTAGAGGTAGTCGGAGAGCCTTCCATGGAAGGCCTGTGGAGC
AGTAATAAGTAGCATCGTCTTGCCCTGTTATTGTTGCTTTTAGTTTGTAGTATCTCTTAT
CTGCTTTCGCAATTAGTAGCTTATGTTTGGAGTTGTTATATCCTAGTCAACGGTTTCTAT
TATCCATGAATTTGTGTTTCAGTATAGTAAAAAAAAAAAAAAAA

Homology of Contig U35_4916 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g49990.2	380	2e-110	protein\|AT hook motif domain containing protein, expressed
Brachypodium v1_2	Bradi5g19900.2	374	6e-108
Arabidopsis v10	None