barSeed - Barley Seed Development Database

Probe CUST_38515_PI390587928

Source Contig U35_4935

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38515_PI390587928	Hv_44K_v2	TACACCACCTTTGTTACCTGCGCATAGGCCATCTTTGTTTACCTCAATATATGCAGGAGC	1671	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59239.1	1976	6e-24	360 - 418	100	59 / 59	minus	ABC09932 ABC11034 ABC14148 ABC36738 ABC44346
JLOC1	JLOC1_38538.1	4298	3e-24	1514 - 1572	100	59 / 59	plus
Harvest21	ABC36020	653	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_4935	1731	3e-25	1672 - 1731	100	60 / 60	plus

Contig Sequence (1731 bp)

>U35_4935 1731 Hv_44K_v2
GCTCTCGGCCCCGCGGCTCCTGCCATAAACCAGGCCAGCCGTCGCGCGGCGCCCCACCTC
TCCTCTCGCCCGGTCAAAGCCAGAGAGCACCAGCCTCAACCTGGCTGGCGGCTGCCGCCT
TCCCCTCCGCTTCTAATCCTCCGCCCCTCCCCGCCTGTGACCATCGGCTCGACCGGCGCC
GAATCTGGGACGGCGCGGGGGGATGGGGGTGTCGCCGGTGTCGCCGGGGGCCAGCGCCGG
CTACGAGTGCTCCTTCAAGATCCTCCTCATCGGGGACTCGGGCGTCGGCAAGAGCAGCCT
CCTCCTCAGCTTCGTCGCCGCCGCCAACCTCGACGACGACATCGCGCCCACCATCGGAGT
TGATTTCAAAATCAAGTTTCTTACTGTTGGTGGAAAGAAACTGAAGCTGACTATATGGGA
TACTGCTGGCCAGGAGAGGTTTAGGACAATCACTAGTTCTTACTATAGAGGTGCTCAAGG
AATTATTCTAGTATATGACGTCGCGAAGAGAGAGAGCTTCACAAATTTGGGTGATGTATG
GACTAAGGAGATAGACTCAAACTCATCAAACAAAGACTGCATAAAAATGCTTGTTGGAAA
CAAAGTTGATAAGGATGATGAGAGAACAGTCACAAGAGAAGAAGGTCTTGCTTTCGCACA
AGAATCCGGATGTCTGTTTCTTGAGAGCAGTGCAAAAACACGAGAAAACGTCGAGAATTG
TTTTGAAGAACTTGTGCTAAAGATCCTTGAAGTTCCAAGTCTCCTGGAGGAAGGCTCGTC
ATCCGTTGTCAAGAGGAACATTCTGAAACAGCAGCAGGAAAGTCATGCAAAGTATGGTGG
TAGATGCTGTCAATAGATCCGTTGCGTATGATTGAGCTCGCTATCTGTGGTCACCGTATC
GCAGGCAAGTTCTAGATACCCAAACTGTAGCTGTTGTCGCGTTCTCGTTGTACATGAGCT
GTGTCTAAACAATCTGTGAGTAGAAAAGGTGGGGAGATTGGGAAAGTAAGTACAGTAGTT
TGTAAGGTTTTGGAGAGTGGTTAAAATTGGTTTGTACAAAGGGAACGCTGTGTCTATTCT
TGCTATCTAATAAGGTATAATTTGCGCAAAGTGCTTTGTCCCAGGGATAAGCCGGACCTT
CCCTACTTTCTTCCCACTTTCTTGATTCTTGATGTTAGTGACTATAGCATGGACGGCACT
GAATGTTTATTGTGAAGACGTGTGCGTTCTGATCCTTTGATAATTCCAACAAACAAAGTT
TGATGCAAGAAACTTTTCCATGGTTCCACCACAAATGCCAAAGGGCCTGGGGGAGTAAAG
AGTTCATCGTTTCCGTCACGCACTTTCCAGATTTCCCAGCAAACAAAGATATGTCCATGG
AGCGTTAGTTTTTCAGAATTCAGCTTCGGATGCCGAAGAGCCCAGGGGACAAGGGAGTAT
AGGCCAATGTTTTCGAGCCAGGAGTTCACTTGACAGTGCAAGAAACTGAAAGCATTACTT
GACTGAACAGAACCCTACCGAAATTTGATATTGGACTTCTGTTCCACTTATGTTGCTGTG
GAAAGCCCTGAAACAGCTGTGAGATTCGCAAAATCACCCACCATGTTCCTAGTGGAATGA
CTACTCGTACCATCTTCTCTACAATATTTCTAGGGAAAGACCAGAAGGACATACACCACC
TTTGTTACCTGCGCATAGGCCATCTTTGTTTACCTCAATATATGCAGGAGC

Homology of Contig U35_4935 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g31830.1	223	2e-124	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi3g27890.1	218	1e-137
Arabidopsis v10	AT5G03530.1	210	8e-96	\| Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, RABC2A \| RAB GTPase homolog C2A \| chr5:885741-887061 REVERSE LENGTH=210