barSeed - Barley Seed Development Database

Probe CUST_38509_PI390587928

Source Contig U35_4938

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38509_PI390587928	Hv_44K_v2	GTCGGCATTTTGTCAGATGGTAGTTTTATCTTAGTAGAACTGTACCGTATATATGTGTTA	633	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60734.1	707	2e-24	140 - 199	100	60 / 60	minus	ABC12084
JLOC1	JLOC1_39632.1	1652	8e-25	1406 - 1465	100	60 / 60	plus
Harvest21	ABC12084	735	3e-25	43 - 102	100	60 / 60	minus	ABC12084
Harvest35	U35_4938	735	3e-25	634 - 693	100	60 / 60	plus

Contig Sequence (735 bp)

>U35_4938 735 Hv_44K_v2
GCAAAAGGCAAAACTGTGGCCCGTGCACGCTGGTCAAAAGGCAAACCAGGCCCGTGATGA
TACTACTACTACACGTCCCAGTGAACCAACGATTGATGTTAGACGCAGTGACGGAGCCGT
CAGAACAGCGACGACGACATCCGTCAGGACCACACGAAGCTTCCCAGCCTTCGTCTCGGG
GCAACACGCACCACGCCTTCTCCTCCCTATAAATGCAGCCACCACCACAAGACCATCACA
GCAACACAAGCTGAGTGAGGCGACGCAGACATCAAGCCAGAAACTGCTCGCTTTAAGAGA
AATATGGTGCTGGGCATGAACTGCTTCGGCGCTCCTGAAGCTGCAAGGAAGGTGTCGCCG
GCGAGCAGGGGACTCGGAGGAGAGGGAGCGGAGGCCGTGGAGCGGAAAGCAGCGGTGGTG
AAAGAGGAGGCGCCGAGTGGCCGTGTGGTCGGCGAGGCCAAGCAGATGGGGGGTGGTGAT
CGGGTGACGGCTGCGGGGAAGGAGGAGGAGAAGAAGAAGAGGAGTGGGGCTCCAATTGTG
ATGCACCACTTTCCCTTCCATTCTCGTCCCGGGCTGCTCTGATTCCAACCTCCGTTAGTC
GAGTGGGTCACCGGAATTTTGATGGAGCTTTTTGTCGGCATTTTGTCAGATGGTAGTTTT
ATCTTAGTAGAACTGTACCGTATATATGTGTTAATAATGTCATAAAAGTTCATTTCGGAA
AAAAAAAAAAAAAAA

Homology of Contig U35_4938 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None